Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1192
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    30   0.89 
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug resis...    27   8.3  
U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of c...    27   8.3  
U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug resis...    27   8.3  
AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrat...    27   8.3  

>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 225  SVSRHTQMRTRWAFEV-TLSPFPSDAPLTXMDVERALSFAPXRGTAVFKSSGXLFAVVVR 401
            + +R T  R   +  V  LS  PS    T   +  A SF P       +S+G  F VVVR
Sbjct: 1791 AAARRTSPRVPMSSNVPALSSRPSSRMSTSSRISTASSFVPESVAVPLQSTGSAFDVVVR 1850

Query: 402  MXG 410
              G
Sbjct: 1851 QSG 1853


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 24/103 (23%), Positives = 36/103 (34%)
 Frame = -3

Query: 385 NSXPELLKTAVPRXGAKLNARSTSXLVRGASLGNGDSVTSNAHRVLIWVXRLTDHLTTAS 206
           +S    L T  P      N   TS   +  S     + +S      ++  ++T   T A 
Sbjct: 163 SSTTTFLSTTTPVSSTTSNISLTSSSTQSYSSSTAGATSS------LFTIKVTQSTTAAG 216

Query: 205 NGSDSSSRGXEYSTTCRXARRAYSKARMACDTGGKASWLLKAW 77
           NG   S  G   +TTC+ +    S    A     K+  L   W
Sbjct: 217 NGQGGSGSGSA-TTTCKCSAGDVSATTAASACSEKSGCLKNQW 258


>U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug resistance
            related protein2 protein.
          Length = 1525

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -3

Query: 304  RGASLGNGDSVTSNAHRVLIWVX-----RLTDHLTTASNGSDSSSRGXEYS 167
            R AS+G+G        R L  V      RL  HL+  S+  D+S+R  EYS
Sbjct: 850  RVASIGDGSGEVDEILRDLGQVKPGILKRLESHLSQESDKEDTSARAIEYS 900


>U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of clr
           protein 1 protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 273 TLSPFPSDAPLTXMDVERALSFAPXRGTA 359
           T SP PSD     +DV+R L+F   R  A
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug resistance
            protein familyprotein 2 protein.
          Length = 1525

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -3

Query: 304  RGASLGNGDSVTSNAHRVLIWVX-----RLTDHLTTASNGSDSSSRGXEYS 167
            R AS+G+G        R L  V      RL  HL+  S+  D+S+R  EYS
Sbjct: 850  RVASIGDGSGEVDEILRDLGQVKPGILKRLESHLSQESDKEDTSARAIEYS 900


>AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrate
           adaptor proteinSOC-1 protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 273 TLSPFPSDAPLTXMDVERALSFAPXRGTA 359
           T SP PSD     +DV+R L+F   R  A
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,105,508
Number of Sequences: 27780
Number of extensions: 128342
Number of successful extensions: 272
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)