Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1192
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63540.1 68418.m07975 expressed protein  ; expression support...    32   0.21 
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC...    28   4.5  
At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /...    28   4.5  

>At5g63540.1 68418.m07975 expressed protein  ; expression supported
           by MPSS
          Length = 602

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = -3

Query: 415 TFPXIRTTTAN--SXPELLKTAVPRXGAKLNARSTSXLVRGASLGNGDSVTSNAHRVLIW 242
           TF  I +T++N         T     GA   ARS +  V G SL    +VTS    + I 
Sbjct: 340 TFSDIHSTSSNIHRAASTAGTGTSCSGACSGARSFANNVGGNSLDQTSNVTSFVEEMHID 399

Query: 241 VXRLTDHLTTASNGSDSSSRGXEYS 167
             R+ D  TT   GSDS     E+S
Sbjct: 400 TGRVRD-TTTHIYGSDSGGVAAEFS 423


>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
           Drosophila melanogaster, EMBL:AF186472
          Length = 566

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 35  SIPKFHSSLQDLKQPSLQEPRCLATRV 115
           ++ K  SS +DL    L+ PRCLA+ V
Sbjct: 21  NVSKGKSSSEDLTNVKLESPRCLASNV 47


>At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase [Lycopersicon
           esculentum] GI:4325090; contains PF00295: Glycosyl
           hydrolases family 28
          Length = 471

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 295 SLGNGDSVTSNAHRVLIWVXRLTDHLTTASNGS 197
           S G G  +    HR LI+   LTD + T  NG+
Sbjct: 125 SYGRGRELPGRRHRSLIYGQNLTDVVITGENGT 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,798,831
Number of Sequences: 28952
Number of extensions: 124352
Number of successful extensions: 290
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)