Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1191
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    27   2.0  
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    26   4.5  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   4.5  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   6.0  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   7.9  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    25   7.9  
SPAC17A5.18c |rec25|mug19|meiotic recombination protein Rec25|Sc...    25   7.9  

>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 221 FWQSVPINNNPVNLVSSGQLL 159
           F +SVP  NNP +L+ SG+LL
Sbjct: 62  FVKSVPRKNNPTDLLYSGKLL 82


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 418 NRCRNMFYRNDFESPYSELNFLIKKHNPLIMPTLKNIP 305
           NR  N  Y N   +PYS  N  I   NP + P   N+P
Sbjct: 41  NRIVNPNYYNMGFNPYSGFNSFIPSFNPFV-PLETNLP 77


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 323 WHDQGIVFFNKKIQLGIR 376
           W D+GI++ + +IQ+G+R
Sbjct: 648 WKDKGILYQDSQIQIGVR 665


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = -2

Query: 412 CRNMFYRNDFESPYSELNFLIKKHNPLIMPTLKNIPRGINESKKEGIVTTLFSYANEQKF 233
           C N F   + ++ +SE + L K  N L+      + R   +S    I++ + SY + Q +
Sbjct: 205 CWNRFLITELDNHFSEAHILEKFPNLLLHCFRGYVERMFIDSMSMSIISKVSSYGSRQTY 264


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -2

Query: 361 NFLIKKHNPLIMPTLKNIPRGINE 290
           +FL+  HN  ++P ++++ R +NE
Sbjct: 426 SFLLSPHNSPVVPVIQDMSRPLNE 449


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 73  LVSDYVFFFCFSLKLLISAHIY 8
           LV +Y+F+ C   +L++  HI+
Sbjct: 120 LVLEYMFYQCIDYRLVVPKHIF 141


>SPAC17A5.18c |rec25|mug19|meiotic recombination protein
           Rec25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 367 RNTEIQNHSYKTYYGTDLQIYQRTTQKI 450
           +NT+ QNH  +   G  ++IYQ   QK+
Sbjct: 53  KNTD-QNHQNQNQEGVIIEIYQELLQKV 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,216
Number of Sequences: 5004
Number of extensions: 56991
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)