Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1191
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0929 + 22694917-22695072,22695399-22695781,22698637-226987...    29   2.7  
01_04_0062 - 15563978-15564616,15564687-15565604                       29   4.7  
07_03_0390 + 17573653-17574089,17574250-17574280,17574397-17575134     28   6.2  
04_03_0737 - 19152942-19154930                                         28   6.2  

>08_02_0929 +
           22694917-22695072,22695399-22695781,22698637-22698769,
           22698870-22699312,22699786-22699864
          Length = 397

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -2

Query: 337 PLIMPTLKNIPRGINESKKEGIVTTLFSYANEQKFWRRSFGKVYRLIIIQ 188
           P ++ T  ++P G N+ K+      +F+    Q++W  ++ KV  L  +Q
Sbjct: 158 PGVLITFLSLPEGGNDLKRIRFSREIFNKWQAQRWWAENYEKVMELYNVQ 207


>01_04_0062 - 15563978-15564616,15564687-15565604
          Length = 518

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 439 TQKIINGNKVIIASRYAFLFYPLNDFWNSISSICDLQ 549
           T+ I    KV++A     +F P  D W ++  IC L+
Sbjct: 104 TRPITPTGKVLMADSVGVVFAPYGDGWRTLRRICTLE 140


>07_03_0390 + 17573653-17574089,17574250-17574280,17574397-17575134
          Length = 401

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 291 SLMPLGIFFKVGMIKGLCFLIRKFNSEYGDSKSFL*NILRHRFTNIPK 434
           S+MPL  ++   +   +  L+ K  + YG+S+S + N  RH     PK
Sbjct: 146 SMMPLKCYYAWDLRVHIRTLLLKLGAPYGESQSHIFNKKRHAIIVDPK 193


>04_03_0737 - 19152942-19154930
          Length = 662

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -2

Query: 382 ESPYSELNFLIKKHNPLIMPTLKNIPRGINES 287
           E+P  EL   I KHN L++  + +IPR INE+
Sbjct: 200 ETPIVELTRSITKHNYLVL-DVDDIPRVINEA 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,339,973
Number of Sequences: 37544
Number of extensions: 279372
Number of successful extensions: 562
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)