Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1191
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14000.2 68416.m01768 expressed protein                             34   0.079
At3g14000.1 68416.m01767 expressed protein                             34   0.079
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR...    29   3.0  
At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR...    29   3.9  

>At3g14000.2 68416.m01768 expressed protein
          Length = 374

 Score = 34.3 bits (75), Expect = 0.079
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -2

Query: 385 FESPYSELNFLIKKHNPLIMPTLKNIPRGINESKKEGIVTTLFSYANEQKFWRRSFGKVY 206
           F     EL   + +  P ++ T  ++P G N+ K+      +F     QK+W  +F KV 
Sbjct: 135 FMEEEDELKEWVAQVEPGVLITFVSLPEGGNDMKRIRFSREMFDKWQAQKWWAENFDKVM 194

Query: 205 RLIIIQ 188
            L  +Q
Sbjct: 195 ELYNVQ 200


>At3g14000.1 68416.m01767 expressed protein
          Length = 374

 Score = 34.3 bits (75), Expect = 0.079
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -2

Query: 385 FESPYSELNFLIKKHNPLIMPTLKNIPRGINESKKEGIVTTLFSYANEQKFWRRSFGKVY 206
           F     EL   + +  P ++ T  ++P G N+ K+      +F     QK+W  +F KV 
Sbjct: 135 FMEEEDELKEWVAQVEPGVLITFVSLPEGGNDMKRIRFSREMFDKWQAQKWWAENFDKVM 194

Query: 205 RLIIIQ 188
            L  +Q
Sbjct: 195 ELYNVQ 200


>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1210

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +2

Query: 218 KTSSPKLLFIGITK*SCYYAFLFTFVNASWNIF*GWHDQGIVFFNKKIQLGIRRFKI 388
           KT+  ++L+  I++   + AF+     + W    GWHD+G + F  +I  G R+ K+
Sbjct: 268 KTTIARVLYDQISEKFQFSAFIENIRLSYWK---GWHDEGNLDFPVEIMTGDRQRKL 321


>At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1059

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = +3

Query: 330 IKGLCFLIRKFNSEYGDSKSFL*NILRHRFTNIPKNYAKNY*WEQGHHRVAVCVSFLPTQ 509
           IKG+CF +   +     S+     +   +F  + ++ ++     QG       +++LP +
Sbjct: 583 IKGICFDLDNLSGRLNISERAFEGMTNLKFLRVLRDRSEKLYLPQG-------LNYLPKK 635

Query: 510 -RFLEFDIFNMRSATQNYILIVFKNRH 587
            R +E+D F M+S   N+      N H
Sbjct: 636 LRLIEWDYFPMKSLPSNFCTTYLVNLH 662


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,536,988
Number of Sequences: 28952
Number of extensions: 263364
Number of successful extensions: 605
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)