Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1188
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    48   1e-06
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    48   2e-06
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    31   0.21 
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    28   1.1  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    26   6.0  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.9  

>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
 Frame = +2

Query: 284 GPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLKLVALRWSRS*KL 463
           GPY+QA+ +   ++ SG   + +D   V G  + QTR  ++NL  VL++      +  K+
Sbjct: 15  GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73

Query: 464 X-FVG*HGRLPNFQQSYAEYFPKACPARMTYEVSRLPLXSSXG 589
             F+          + Y E  P   PAR T    ++PL S  G
Sbjct: 74  NIFLTDIDDFAAMNEVYKEMLPDPMPARTTVAAGKIPLSSKGG 116


>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
 Frame = +2

Query: 239 SNKNNITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRH 418
           S K  I SP++    GPY+QAI A+  +Y SG + +  + +++ G    QTRQ L NL+ 
Sbjct: 37  STKTPINSPKL-SSAGPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQE 94

Query: 419 VLKLVALRWSRS*KL-XFVG*HGRLPNFQQSYAEYFPKACPARMTYEVSRLPL 574
           VL       ++  K+  F+          + Y E  P   PAR    V  +PL
Sbjct: 95  VLTEAGSSLNKIVKVNIFLADMDDFAAVNKVYTEVLPDPKPARSCVAVKTVPL 147


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +2

Query: 281 VGPYSQAILADKTLYISGILGL 346
           +GPYSQ+I A+  ++ISG +GL
Sbjct: 421 IGPYSQSICANGVVFISGQIGL 442


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = +1

Query: 391 PSGSGQSATCLEAGGASLESVVKTLXCWLA---WTTSKLSTKLCRIFS 525
           P G+ + + C+E       +    + CW     WT+ K    LCR FS
Sbjct: 250 PEGNRKCSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLCRAFS 297


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 691 NFGPKEVPLFRVLQGAWGRXVAXPSLRKRAMASIS 587
           N  PK+   F  L  AW      P L +  +A+IS
Sbjct: 353 NHFPKQHTCFEALLSAWSTTFTIPKLTETRLAAIS 387


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 488 VVHASQQXRVFTTDSNEAPPASRHVADCPEPDGSALQHHR 369
           + H+S   R  +T+    P  +R VA+ P P     + HR
Sbjct: 206 ISHSSSSSRKSSTELKIPPVETRIVAEIPVPSSVKRRRHR 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,436
Number of Sequences: 5004
Number of extensions: 54747
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)