Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1188
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102... 49 4e-06
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 41 0.001
05_05_0232 + 23492225-23492250,23492261-23492393,23492513-234927... 32 0.50
12_02_0999 - 25134828-25135113,25135479-25135535,25136171-251362... 29 3.5
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9... 29 3.5
09_02_0027 + 3105963-3106276,3106298-3107027,3107069-3107134,310... 29 4.7
07_01_0548 - 4061829-4062956 29 4.7
04_03_0447 + 16015043-16015489,16017358-16017530,16017906-160180... 28 6.2
03_05_1079 + 30222017-30222903,30222992-30223117,30223752-302238... 28 6.2
02_02_0240 + 8196140-8198248,8198381-8198650 28 8.2
>07_03_0593 +
19808148-19808310,19809416-19809531,19810129-19810202,
19810286-19810335,19810498-19810592
Length = 165
Score = 48.8 bits (111), Expect = 4e-06
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Frame = +2
Query: 281 VGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLKLVALRWSRS*K 460
+GPYSQAI A+ +++SG+LGL+ + + N+ +LK +S K
Sbjct: 69 LGPYSQAIKANNMVFVSGVLGLNPEV--------------MKNMGEILKASGASYSSVVK 114
Query: 461 LXFVG*HGRLPNFQ---QSYAEYFPKACPARMTYEVSRLPL 574
+ L +F+ + YA+YFP PAR TY+V+ LPL
Sbjct: 115 TTIM--LADLQDFKKVNEIYAKYFPAPAPARSTYQVAALPL 153
>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 281 VGPYSQAILADKTLYISGILGLDRDAQMVC-GGAEAQTRQALDN 409
+GPYSQA L + LY++G LGLD +C GG A+ AL N
Sbjct: 870 IGPYSQATLHGEILYMAGQLGLDPPTMKLCPGGPTAELEFALRN 913
>05_05_0232 +
23492225-23492250,23492261-23492393,23492513-23492734,
23493238-23493504,23493631-23493819
Length = 278
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -1
Query: 524 ENILHNFVESLEVVHASQQXRVFTTDSNEAPPASRHVADCP 402
E++LH ++VVHA V+ EAPPA +HV D P
Sbjct: 209 EDVLHG----VQVVHAGGGALVYPVMRLEAPPAVQHVGDVP 245
>12_02_0999 -
25134828-25135113,25135479-25135535,25136171-25136296,
25136399-25137289,25137379-25137533
Length = 504
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -1
Query: 482 HASQQXRVFTTDSNEAPPASRHVADCPEPDGSALQHHRRPSVHLDPIREFQKC--IRSCP 309
H S++ ++ S + P S +AD P + S ++ ++P R + KC +R CP
Sbjct: 344 HCSKRRKLRIKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCP 403
Query: 308 LK 303
+
Sbjct: 404 AR 405
>05_01_0002 -
8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
9802-9902,10016-10651,10820-10899,11014-11673,
11787-12041,12154-12281,12515-12669,12735-12919,
13020-13049,13164-13239,13371-13504,13703-13994,
14400-14567,14647-14745,14843-15014,15103-15281
Length = 1352
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 268 NISTSRSVQSSNFSGQDLIHFWNSRIGSRCTDGLRWC*SADPSG 399
NIST RSV+SS+ S + H SR G+ C SA P+G
Sbjct: 816 NISTERSVESSHLSRPEQNH---SRANMEVKPGINAC-SATPAG 855
>09_02_0027 +
3105963-3106276,3106298-3107027,3107069-3107134,
3107192-3107324,3108985-3109088
Length = 448
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 479 HGRLPNFQQSYAEYFPKA 532
HGR+P+FQQ+ E PKA
Sbjct: 165 HGRIPSFQQTRDESIPKA 182
>07_01_0548 - 4061829-4062956
Length = 375
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 408 LSRA*RVCASAPPQTICASRSNPRIPEMYKVLSA 307
LS A ++C++ PP + +NPR+ Y L A
Sbjct: 21 LSAAAQLCSACPPAASQTAENNPRLQRAYVALQA 54
>04_03_0447 +
16015043-16015489,16017358-16017530,16017906-16018008,
16018177-16018521
Length = 355
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +2
Query: 485 RLPNFQQSYAEYFPKACPARMTYEVSRLPLXSSXGDRGHRSFAETWXSNXPAP 643
++ NF Q+ K P M+ S GDR H +F TW ++ P
Sbjct: 295 KIHNFDQNVGALSVKLTPDEMSELESYASADVVQGDRYHGTFLNTWKNSETPP 347
>03_05_1079 +
30222017-30222903,30222992-30223117,30223752-30223808,
30224883-30224913,30225159-30225236,30225297-30225383
Length = 421
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -1
Query: 482 HASQQXRVFTTDSNEAPPASRHVADCPEPDGSALQHHRRPSVHLDPIREFQKC--IRSCP 309
H +++ ++ S + P S VAD P + S ++ ++P R + KC +R CP
Sbjct: 291 HCAKKRKLRIRRSIKVPAISNKVADIPADEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCP 350
Query: 308 LK 303
+
Sbjct: 351 AR 352
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 27.9 bits (59), Expect = 8.2
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = -1
Query: 521 NILHNFVESLEVVHASQQXRVFTTDSNEAPP-ASRHVAD-CPEPDGSALQHHRRPSVHLD 348
N NF++ + HA Q RV ++ APP A+ AD PEPD S S
Sbjct: 84 NAKFNFLQPSDPYHAYYQHRV--SELAAAPPSAAASAADAAPEPDESGAAPPPADSAAAP 141
Query: 347 PI-REFQKCIRSCPLKLLDCTDLLV 276
+ E K S P ++ T +LV
Sbjct: 142 TVDGEAAKADHSAPFRVPPPTKVLV 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,927,292
Number of Sequences: 37544
Number of extensions: 365135
Number of successful extensions: 940
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -