Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1188
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-12|AAV58884.1|  137|Caenorhabditis elegans Hypothetical p...    62   4e-10
U39851-11|AAV58883.1|  171|Caenorhabditis elegans Hypothetical p...    62   4e-10
U39851-10|AAM22035.1|  144|Caenorhabditis elegans Hypothetical p...    62   4e-10
Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.      29   3.2  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    29   4.2  
Z81112-6|CAB03277.1|  673|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z77136-10|CAB00887.1|  673|Caenorhabditis elegans Hypothetical p...    28   5.6  
AF043693-2|AAB97535.2|  351|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF039720-6|AAB96700.1|  347|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z79599-1|CAB01871.4|  493|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z79597-3|CAB01862.4|  493|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z35663-16|CAA84726.2|  462|Caenorhabditis elegans Hypothetical p...    27   9.8  

>U39851-12|AAV58884.1|  137|Caenorhabditis elegans Hypothetical
           protein C23G10.2c protein.
          Length = 137

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 38/107 (35%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
 Frame = +2

Query: 254 ITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLKLV 433
           I+S      +GPYSQA+ A  T+Y+SG LGLD     +  G   QT Q+L NL  VLK  
Sbjct: 10  ISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKNLGEVLKAA 69

Query: 434 ALRWSRS*KLXFVG*H-GRLPNFQQSYAEYFPKACPARMTYEVSRLP 571
              +    K   +  +        + Y +YF    PAR  Y+V+ LP
Sbjct: 70  GADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALP 116


>U39851-11|AAV58883.1|  171|Caenorhabditis elegans Hypothetical
           protein C23G10.2a protein.
          Length = 171

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 38/107 (35%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
 Frame = +2

Query: 254 ITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLKLV 433
           I+S      +GPYSQA+ A  T+Y+SG LGLD     +  G   QT Q+L NL  VLK  
Sbjct: 44  ISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKNLGEVLKAA 103

Query: 434 ALRWSRS*KLXFVG*H-GRLPNFQQSYAEYFPKACPARMTYEVSRLP 571
              +    K   +  +        + Y +YF    PAR  Y+V+ LP
Sbjct: 104 GADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALP 150


>U39851-10|AAM22035.1|  144|Caenorhabditis elegans Hypothetical
           protein C23G10.2b protein.
          Length = 144

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 38/107 (35%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
 Frame = +2

Query: 254 ITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLKLV 433
           I+S      +GPYSQA+ A  T+Y+SG LGLD     +  G   QT Q+L NL  VLK  
Sbjct: 17  ISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKNLGEVLKAA 76

Query: 434 ALRWSRS*KLXFVG*H-GRLPNFQQSYAEYFPKACPARMTYEVSRLP 571
              +    K   +  +        + Y +YF    PAR  Y+V+ LP
Sbjct: 77  GADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALP 123


>Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical
           protein D2045.1b protein.
          Length = 634

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 479 HGRLPNF-QQSYAEYFPKACPARMTYEVSRLPLXSSXGDRGHRSF 610
           H ++PN+ QQ    ++P   P +M  + ++ P  S  G+R  + F
Sbjct: 518 HPQIPNYYQQPQQVFYPMIMPQQMPMQQNQHPQQSLMGERSDQGF 562


>Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical
           protein D2045.1a protein.
          Length = 959

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 479 HGRLPNF-QQSYAEYFPKACPARMTYEVSRLPLXSSXGDRGHRSF 610
           H ++PN+ QQ    ++P   P +M  + ++ P  S  G+R  + F
Sbjct: 843 HPQIPNYYQQPQQVFYPMIMPQQMPMQQNQHPQQSLMGERSDQGF 887


>AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.
          Length = 959

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 479 HGRLPNF-QQSYAEYFPKACPARMTYEVSRLPLXSSXGDRGHRSF 610
           H ++PN+ QQ    ++P   P +M  + ++ P  S  G+R  + F
Sbjct: 843 HPQIPNYYQQPQQVFYPMIMPQQMPMQQNQHPQQSLMGERSDQGF 887


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/66 (31%), Positives = 26/66 (39%)
 Frame = -1

Query: 557 LRMSFEQGKL*ENILHNFVESLEVVHASQQXRVFTTDSNEAPPASRHVADCPEPDGSALQ 378
           LR  F   K  E      VES   +H+SQQ +      +  PP S      P P    +Q
Sbjct: 69  LRKDFHLAKYSERRASYHVESSSYIHSSQQIQ-HPPQQHHPPPPS------PPPVAETIQ 121

Query: 377 HHRRPS 360
           H   PS
Sbjct: 122 HQPHPS 127


>Z81112-6|CAB03277.1|  673|Caenorhabditis elegans Hypothetical
           protein ZC376.3 protein.
          Length = 673

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 482 HASQQXRVFTTDSNEAPPASRHVADCPEPDGS 387
           HAS+  +VF  D  +A PA +  A  P P  S
Sbjct: 418 HASKNTKVFIYDYKDAGPAFKKYAQAPPPHHS 449


>Z77136-10|CAB00887.1|  673|Caenorhabditis elegans Hypothetical
           protein ZC376.3 protein.
          Length = 673

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 482 HASQQXRVFTTDSNEAPPASRHVADCPEPDGS 387
           HAS+  +VF  D  +A PA +  A  P P  S
Sbjct: 418 HASKNTKVFIYDYKDAGPAFKKYAQAPPPHHS 449


>AF043693-2|AAB97535.2|  351|Caenorhabditis elegans Hypothetical
           protein C34B2.3 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 95  TDSVIFLSFELLTYLHLKNKNELRRFC 175
           T+++  L FEL   L ++ KN+ ++FC
Sbjct: 78  TEAIKMLQFELFVLLTVEKKNQCKQFC 104


>AF039720-6|AAB96700.1|  347|Caenorhabditis elegans Hypothetical
           protein F33D11.7 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 95  TDSVIFLSFELLTYLHLKNKNELRRFC 175
           T+++  L FEL   L ++ KN+ ++FC
Sbjct: 77  TEAIKMLQFELFVLLTVEKKNQCKQFC 103


>Z79599-1|CAB01871.4|  493|Caenorhabditis elegans Hypothetical
           protein C33A11.4 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 451 PTPTKRHQLQDMSQIVQSLTGLRFSTT 371
           P P  +HQL ++S + Q L+   F+TT
Sbjct: 263 PLPVMQHQLNNLSSLTQVLSQQTFNTT 289


>Z79597-3|CAB01862.4|  493|Caenorhabditis elegans Hypothetical
           protein C33A11.4 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 451 PTPTKRHQLQDMSQIVQSLTGLRFSTT 371
           P P  +HQL ++S + Q L+   F+TT
Sbjct: 263 PLPVMQHQLNNLSSLTQVLSQQTFNTT 289


>AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical
           protein F41A4.1 protein.
          Length = 696

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 297 KQF*RTRPYTFLEFSDWIEMHRWSAVVLKRRPVRLWT 407
           KQF    P +  EF+D  E H    +V+K  P  LWT
Sbjct: 592 KQFDFPAPKSDFEFNDNGEFHEGDVIVVKHSP-NLWT 627


>Z35663-16|CAA84726.2|  462|Caenorhabditis elegans Hypothetical
           protein T04A8.3 protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 258 VILFLLLYCYSNFLLNSFWAKLCLRTPVQNLLSSFLFFR 142
           + + L L CY+N  ++  W+   +R  V N  SSFL  R
Sbjct: 5   IFMGLCLLCYTNAQVDRDWSFQQIRWKVTNARSSFLRHR 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,334,629
Number of Sequences: 27780
Number of extensions: 310344
Number of successful extensions: 915
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)