Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1188
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein c...    66   2e-11
At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c...    37   0.015
At4g32410.1 68417.m04614 cellulose synthase, catalytic subunit, ...    30   1.7  
At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit, ...    30   1.7  
At5g28650.1 68418.m03508 WRKY family transcription factor DNA-bi...    29   2.2  
At3g04670.1 68416.m00500 WRKY family transcription factor simila...    29   2.2  
At4g04920.1 68417.m00715 expressed protein                             28   6.8  
At3g13080.2 68416.m01636 ABC transporter family protein almost i...    28   6.8  
At3g13080.1 68416.m01635 ABC transporter family protein almost i...    28   6.8  

>At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein
           contains Pfam domain PF01042: Endoribonuclease L-PSP
          Length = 187

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
 Frame = +2

Query: 245 KNNITSPEIYQPVGPYSQAILADKTLYISGILGL-DRDAQMVCGGAEAQTRQALDNLRHV 421
           K  +++ +    +GPYSQAI A+  +++SG+LGL     + V    E QT Q L N+  +
Sbjct: 64  KEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVLKNMGEI 123

Query: 422 LKLVALRWSRS*KLXFVG*HGRLPNFQ---QSYAEYFPKACPARMTYEVSRLPL 574
           LK     +S   K   +     L +F+   + YA+YFP   PAR TY+V+ LPL
Sbjct: 124 LKASGADYSSVVKTTIM--LADLADFKTVNEIYAKYFPAPSPARSTYQVAALPL 175


>At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein
           contains Pfam domain PF01902: Domain of unknown function
          Length = 715

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +2

Query: 281 VGPYSQAILADKTLYISGILGLDRDA-QMVCGGAEAQTRQALDN 409
           +GPYSQA L    L+++G LGLD     +   GA A+  QAL N
Sbjct: 425 IGPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTN 468


>At4g32410.1 68417.m04614 cellulose synthase, catalytic subunit,
           putative similar to cellulose synthase-1 [gi:9622874]
           and -2 [gi:9622876] from Zea mays
          Length = 1081

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 644 MGPXCCYXKSPQKSDGLDL 588
           +G  CCY + PQ+ DG+DL
Sbjct: 584 IGKKCCYVQFPQRFDGIDL 602


>At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit,
           putative similar to cellulose synthase-1 [gi:9622874]
           and -2 [gi:9622876] from Zea mays
          Length = 1065

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 644 MGPXCCYXKSPQKSDGLDL 588
           +G  CCY + PQ+ DG+DL
Sbjct: 571 IGKKCCYVQFPQRFDGIDL 589


>At5g28650.1 68418.m03508 WRKY family transcription factor
           DNA-binding protein WRKY3, parsley, PIR:S72445
          Length = 330

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 482 HASQQXRVFTTDSNEAPPASRHVADCPEPDGSALQHHRRPSVHLDPIREFQKC--IRSCP 309
           H S++ ++    S + P  S  +AD P  + S  ++ ++P       R + KC  +R CP
Sbjct: 235 HCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCP 294

Query: 308 LK 303
            +
Sbjct: 295 AR 296


>At3g04670.1 68416.m00500 WRKY family transcription factor similar
           to elicitor response element binding protein WRKY3
           isolog GB:AAB63078 [Arabidopsis thaliana]
          Length = 330

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 482 HASQQXRVFTTDSNEAPPASRHVADCPEPDGSALQHHRRPSVHLDPIREFQKC--IRSCP 309
           H S++ ++    S + P  S  +AD P  + S  ++ ++P       R + KC  +R CP
Sbjct: 235 HCSKKRKLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCP 294

Query: 308 LK 303
            +
Sbjct: 295 AR 296


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 239 SNKNNITSPEIYQPVGPYSQAILADKTLYIS 331
           SN+NN+TSP       P +  +  DK+LY++
Sbjct: 844 SNRNNVTSP-TQNASSPATPQVFPDKSLYLA 873


>At3g13080.2 68416.m01636 ABC transporter family protein almost
            identical to MRP-like ABC transporter GI:2316016 from
            [Arabidopsis thaliana]; contains Pfam profile: PF00005
            ABC transporter
          Length = 1489

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +1

Query: 454  VKTLXCWLAWTTSKLSTKLC---RIFS-*SLPCSNDIRSQSTTVXEQLWRSRPSLFCGDL 621
            + TL  WL WT   L  K+    RI    S+P    +  +S    EQ W SR  +   DL
Sbjct: 1216 LNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPLVIESNR-PEQSWPSRGEVEIRDL 1274

Query: 622  X*QQXGPMPL 651
              +    MPL
Sbjct: 1275 QVRYAPHMPL 1284


>At3g13080.1 68416.m01635 ABC transporter family protein almost
            identical to MRP-like ABC transporter GI:2316016 from
            [Arabidopsis thaliana]; contains Pfam profile: PF00005
            ABC transporter
          Length = 1514

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = +1

Query: 454  VKTLXCWLAWTTSKLSTKLC---RIFS-*SLPCSNDIRSQSTTVXEQLWRSRPSLFCGDL 621
            + TL  WL WT   L  K+    RI    S+P    +  +S    EQ W SR  +   DL
Sbjct: 1216 LNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPLVIESNR-PEQSWPSRGEVEIRDL 1274

Query: 622  X*QQXGPMPL 651
              +    MPL
Sbjct: 1275 QVRYAPHMPL 1284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,370,197
Number of Sequences: 28952
Number of extensions: 287081
Number of successful extensions: 737
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)