Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1187
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 98 6e-22
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 53 2e-08
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 51 7e-08
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 50 1e-07
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 28 0.76
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 27 1.3
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 26 2.3
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 3.1
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 3.1
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 4.1
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 5.4
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 7.1
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 7.1
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo... 24 9.4
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 24 9.4
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 97.9 bits (233), Expect = 6e-22
Identities = 52/112 (46%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLNASMSTITKLQGAS-T 299
MREIVHIQAGQCGNQ+GA FW I+DEHG+D+ G Y G S+ Q + G
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 300 SREL*WWTLSLEPWTPSV--PGRLGKSSDRTTSVFGQSXAVNNWAKGHYTEG 449
R + + LEP T G+ G ++GQS A N WAKGHYTEG
Sbjct: 61 PRAV---LVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEG 109
Score = 85.0 bits (201), Expect = 5e-18
Identities = 35/44 (79%), Positives = 42/44 (95%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDN 388
R+NVY+NEA+GGKYVPRAV+VDLEPGTMD+V+SG FG +FRPDN
Sbjct: 46 RLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDN 89
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 53.2 bits (122), Expect = 2e-08
Identities = 19/41 (46%), Positives = 30/41 (73%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPD 385
+ +++E GKYVPR++ VDLEP +D VR+GP+ +F P+
Sbjct: 50 STFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPE 90
Score = 49.2 bits (112), Expect = 3e-07
Identities = 40/115 (34%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQ-LNASMSTITKL--QGA 293
MREI+ I GQ G QIG WE+ EHGI G + ++ Q + ST QG
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 294 STSREL*WWTLSLEPWTPSVPGRLGKSSD---RTTSVFGQSXAVNNWAKGHYTEG 449
R + + LEP R G D + G+ A NN+A+GHYT G
Sbjct: 61 YVPRSI---YVDLEP-NVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVG 111
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 51.2 bits (117), Expect = 7e-08
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = +2
Query: 269 YYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPD 385
+++E GK+VPR++ VDLEP +D VR+GP+ +F P+
Sbjct: 56 FFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPE 94
Score = 47.2 bits (107), Expect = 1e-06
Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQ-----LNASMSTITKL- 284
MRE++ + GQ G QIG WE+ EHGI G + +S++ LN T
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 285 -QGASTSREL*WWTLSLEPWTPSVPGRLGKSSD---RTTSVFGQSXAVNNWAKGHYTEG 449
QG R + + LEP R G D V G+ A NN+A+GHYT G
Sbjct: 61 GQGKFVPRSI---YVDLEP-NVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVG 115
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 50.4 bits (115), Expect = 1e-07
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +3
Query: 126 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 224
REI+ +QAGQCGNQIG++FW+ + EHGI G
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDG 35
Score = 48.0 bits (109), Expect = 7e-07
Identities = 16/53 (30%), Positives = 35/53 (66%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFXLRTVXGG 415
R +V++ ++ +Y+PRA+++DLEP ++++ S +G ++ P+N + GG
Sbjct: 47 RKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGG 99
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 27.9 bits (59), Expect = 0.76
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -1
Query: 287 LKLRYSRH*CVKLQVGVAAVSTRGVNAVLVRDYFPELCSDLIPALTRLDVDDFPHDCT 114
++L SR C + G+ + V + +Y P S+ + + RLDVD F H T
Sbjct: 599 VRLGISRKRCERYPFGILCIIFT-VLEIAAEEYSPNWESEELRLVNRLDVDSFLHPKT 655
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 27.1 bits (57), Expect = 1.3
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -3
Query: 426 PSYSPPQTVRRXKLSGRKICPNGPERTESMVPGSRS 319
PS PP+ V L R I PNGPE + + GS S
Sbjct: 20 PSTPPPKEV----LHTRVIVPNGPEEIKLRLVGSHS 51
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -1
Query: 191 YFPELCSDLIPALTRLDVDDFPHDCTKNLEPPESN 87
+F E+ + P +LD+DD + + P E+N
Sbjct: 36 FFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENN 70
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 3.1
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 88 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 246
F S S S +STS RV++ ++ SSG + T+ + V +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 3.1
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 88 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 246
F S S S +STS RV++ ++ SSG + T+ + V +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 4.1
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -2
Query: 148 AWMWTISLMIALKIWNPPNRI 86
AW+W ++LM+ + PN++
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.0 bits (52), Expect = 5.4
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 102 FQIFSAIMREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLNASMS 269
F + S I I C + +W+V+ G+ TGA S SD L S+S
Sbjct: 807 FSVLSLICPSRTLIIDKACVEKTWPYWWDVLHQSFGVKLTGATSVASD-PLKGSIS 861
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 24.6 bits (51), Expect = 7.1
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 189 VISDEHGIDATGAYSGDSDLQLNASMSTITK 281
++ +HG+D G + GDS ++N+ + +K
Sbjct: 281 IVMGDHGMDNKGNHGGDSFDEINSVLWMYSK 311
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 427 AQLFTAXDCPKT-EVVRSEDLPKRPGTDGVH 338
A L D P+ E + + DLP+ PGT +H
Sbjct: 6 ADLSDMSDSPEYFETLANRDLPRLPGTSKLH 36
>SPCC16A11.01 ||SPCC63.15|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 163 FPH*PAWMWTISLMIALKIWNPPNR 89
FP MWTI L++ L +W+ ++
Sbjct: 25 FPLVSFLMWTIGLIVLLGLWSTQDK 49
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 324 LSLEPWTPSVPGRLGKSSDRTTSVFGQSXAVNNWAK 431
++L TPS+ G S FG++ N W K
Sbjct: 343 INLSELTPSLNGPFTPDLSTPVSKFGEAIEKNKWPK 378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,333
Number of Sequences: 5004
Number of extensions: 38723
Number of successful extensions: 101
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -