Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1187
(449 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 112 1e-25
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 112 1e-25
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 111 2e-25
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 111 2e-25
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 111 3e-25
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 109 8e-25
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 109 8e-25
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 108 2e-24
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 107 3e-24
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 54 4e-08
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 54 4e-08
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 54 4e-08
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 54 4e-08
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 54 4e-08
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 54 4e-08
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 53 1e-07
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 48 3e-06
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 48 3e-06
At4g37190.1 68417.m05265 expressed protein 30 0.63
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 29 1.1
At2g26850.1 68415.m03221 F-box family protein contains Pfam PF00... 29 1.1
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 27 7.7
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 112 bits (269), Expect = 1e-25
Identities = 61/112 (54%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLNASMSTITKLQ-GAST 299
MREI+HIQ GQCGNQIGAKFWEV+ EHGID TG Y+GDSDLQL + G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 300 SREL*WWTLSLEPWTPSV--PGRLGKSSDRTTSVFGQSXAVNNWAKGHYTEG 449
R + + LEP T G G++ VFGQS A NNWAKGHYTEG
Sbjct: 61 PRAV---LMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEG 109
Score = 87.4 bits (207), Expect = 4e-18
Identities = 37/45 (82%), Positives = 43/45 (95%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNF 391
RINVYYNEAS G++VPRAV++DLEPGTMDS+RSGP+GQ FRPDNF
Sbjct: 46 RINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNF 90
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 112 bits (269), Expect = 1e-25
Identities = 61/112 (54%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLNASMSTITKLQ-GAST 299
MREI+HIQ GQCGNQIGAKFWEV+ EHGID TG Y+GDSDLQL + G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 300 SREL*WWTLSLEPWTPSV--PGRLGKSSDRTTSVFGQSXAVNNWAKGHYTEG 449
R + + LEP T G G++ VFGQS A NNWAKGHYTEG
Sbjct: 61 PRAV---LMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEG 109
Score = 87.4 bits (207), Expect = 4e-18
Identities = 37/45 (82%), Positives = 43/45 (95%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNF 391
RINVYYNEAS G++VPRAV++DLEPGTMDS+RSGP+GQ FRPDNF
Sbjct: 46 RINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNF 90
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 111 bits (268), Expect = 2e-25
Identities = 62/112 (55%), Positives = 67/112 (59%), Gaps = 3/112 (2%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLNASMSTITKLQGAS-T 299
MREI+HIQ GQCGNQIGAKFWEVI DEHGID TG Y GDS LQL + G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 300 SREL*WWTLSLEPWTPSV--PGRLGKSSDRTTSVFGQSXAVNNWAKGHYTEG 449
R + + LEP T G G+ VFGQS A NNWAKGHYTEG
Sbjct: 61 PRAV---LMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEG 109
Score = 93.5 bits (222), Expect = 6e-20
Identities = 40/45 (88%), Positives = 45/45 (100%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNF 391
RI+VY+NEASGGKYVPRAV++DLEPGTMDS+RSGPFGQIFRPDNF
Sbjct: 46 RIDVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNF 90
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 111 bits (267), Expect = 2e-25
Identities = 63/113 (55%), Positives = 72/113 (63%), Gaps = 4/113 (3%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGD-SDLQLNASMSTITKLQGAS- 296
MREI+HIQ GQCGNQIG+KFWEVI DEHGID+TG YSGD +DLQL + G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 297 TSREL*WWTLSLEPWT-PSV-PGRLGKSSDRTTSVFGQSXAVNNWAKGHYTEG 449
R + + LEP T S+ G G+ VFGQS A NNWAKGHYTEG
Sbjct: 61 VPRAV---LMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEG 110
Score = 96.7 bits (230), Expect = 6e-21
Identities = 41/45 (91%), Positives = 45/45 (100%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNF 391
RINVYYNEASGG+YVPRAV++DLEPGTMDS+RSGPFGQIFRPDNF
Sbjct: 47 RINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNF 91
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 111 bits (266), Expect = 3e-25
Identities = 62/112 (55%), Positives = 70/112 (62%), Gaps = 3/112 (2%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLNASMSTITKLQ-GAST 299
MREI+HIQ GQCGNQIG+KFWEV+ DEHGID TG Y G+SDLQL + G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 300 SREL*WWTLSLEPWT-PSV-PGRLGKSSDRTTSVFGQSXAVNNWAKGHYTEG 449
R + + LEP T SV G G+ VFGQS A NNWAKGHYTEG
Sbjct: 61 PRAI---LMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEG 109
Score = 90.2 bits (214), Expect = 6e-19
Identities = 37/45 (82%), Positives = 44/45 (97%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNF 391
R+NVYYNEAS G+YVPRA+++DLEPGTMDSVR+GP+GQIFRPDNF
Sbjct: 46 RVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNF 90
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 109 bits (262), Expect = 8e-25
Identities = 61/112 (54%), Positives = 70/112 (62%), Gaps = 3/112 (2%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLNASMSTITKLQ-GAST 299
MREI+HIQ GQCGNQIGAKFWEV+ EHGID+TG Y G++DLQL + G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 300 SREL*WWTLSLEPWT-PSV-PGRLGKSSDRTTSVFGQSXAVNNWAKGHYTEG 449
R + + LEP T SV G G+ VFGQS A NNWAKGHYTEG
Sbjct: 61 PRAV---LMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEG 109
Score = 90.2 bits (214), Expect = 6e-19
Identities = 38/45 (84%), Positives = 44/45 (97%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNF 391
R+NVYYNEAS G++VPRAV++DLEPGTMDSVRSGP+GQIFRPDNF
Sbjct: 46 RVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNF 90
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 109 bits (262), Expect = 8e-25
Identities = 61/113 (53%), Positives = 71/113 (62%), Gaps = 4/113 (3%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDS-DLQLNASMSTITKLQGAS- 296
MREI+H+Q GQCGNQIG+KFWEVI DEHG+D TG Y+GDS DLQL + G
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 297 TSREL*WWTLSLEPWT-PSV-PGRLGKSSDRTTSVFGQSXAVNNWAKGHYTEG 449
R + + LEP T S+ G G+ VFGQS A NNWAKGHYTEG
Sbjct: 61 VPRAV---LMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEG 110
Score = 95.5 bits (227), Expect = 1e-20
Identities = 40/45 (88%), Positives = 45/45 (100%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNF 391
RINVYYNEASGG+YVPRAV++DLEPGTMDS+RSGP+GQIFRPDNF
Sbjct: 47 RINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNF 91
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 108 bits (259), Expect = 2e-24
Identities = 60/112 (53%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLNASMSTITKLQGAS-T 299
MREI+HIQ GQCGNQIGAKFWEVI EHGID TG GD+DLQL + G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 300 SREL*WWTLSLEPWTPSV--PGRLGKSSDRTTSVFGQSXAVNNWAKGHYTEG 449
R + + LEP T G G+ VFGQS A NNWAKGHYTEG
Sbjct: 61 PRAV---LMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEG 109
Score = 95.5 bits (227), Expect = 1e-20
Identities = 41/45 (91%), Positives = 45/45 (100%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNF 391
RINVY+NEASGGKYVPRAV++DLEPGTMDS+RSGPFGQIFRPDNF
Sbjct: 46 RINVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNF 90
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 107 bits (258), Expect = 3e-24
Identities = 61/112 (54%), Positives = 70/112 (62%), Gaps = 3/112 (2%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLNASMSTITKLQ-GAST 299
MREI+HIQ GQCGNQIG+KFWEV++ EHGID TG Y GDS+LQL + G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 300 SREL*WWTLSLEPWT-PSV-PGRLGKSSDRTTSVFGQSXAVNNWAKGHYTEG 449
R + + LEP T SV G G+ VFGQS A NNWAKGHYTEG
Sbjct: 61 PRAV---LMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEG 109
Score = 91.9 bits (218), Expect = 2e-19
Identities = 39/45 (86%), Positives = 44/45 (97%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNF 391
R+NVYYNEAS G+YVPRAV++DLEPGTMDSVRSGP+GQIFRPDNF
Sbjct: 46 RVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNF 90
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 54.0 bits (124), Expect = 4e-08
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPD 385
N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPE 90
Score = 48.8 bits (111), Expect = 2e-06
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL-NASMSTITKLQGAST 299
MREI+ I GQ G Q+G WE+ EHGI G D+ + + + + +T GA
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 300 SREL*WWTLSLEPWTPSV--PGRLGKSSDRTTSVFGQSXAVNNWAKGHYTEG 449
+ + LEP G + + G+ A NN+A+GHYT G
Sbjct: 61 HVPRAVF-VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVG 111
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 54.0 bits (124), Expect = 4e-08
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPD 385
N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPE 90
Score = 48.8 bits (111), Expect = 2e-06
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQL-NASMSTITKLQGAST 299
MREI+ I GQ G Q+G WE+ EHGI G D+ + + + + +T GA
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 300 SREL*WWTLSLEPWTPSV--PGRLGKSSDRTTSVFGQSXAVNNWAKGHYTEG 449
+ + LEP G + + G+ A NN+A+GHYT G
Sbjct: 61 HVPRAVF-VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVG 111
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 54.0 bits (124), Expect = 4e-08
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPD 385
N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPE 90
Score = 46.0 bits (104), Expect = 1e-05
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDL-QLNASMSTITKLQGAST 299
MRE + I GQ G Q+G WE+ EHGI G GD + + + +T GA
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 300 SREL*WWTLSLEPWTPSV--PGRLGKSSDRTTSVFGQSXAVNNWAKGHYTEG 449
+ + LEP G + + G+ A NN+A+GHYT G
Sbjct: 61 HVPRAVF-VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIG 111
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 54.0 bits (124), Expect = 4e-08
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPD 385
N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPE 90
Score = 46.0 bits (104), Expect = 1e-05
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDL-QLNASMSTITKLQGAST 299
MRE + I GQ G Q+G WE+ EHGI G GD + + + +T GA
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 300 SREL*WWTLSLEPWTPSV--PGRLGKSSDRTTSVFGQSXAVNNWAKGHYTEG 449
+ + LEP G + + G+ A NN+A+GHYT G
Sbjct: 61 HVPRAVF-VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIG 111
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 54.0 bits (124), Expect = 4e-08
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPD 385
N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPE 90
Score = 43.6 bits (98), Expect = 6e-05
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDL-QLNASMSTITKLQGAST 299
MRE + I GQ G Q+G WE+ EHGI G D + + + +T GA
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 300 SREL*WWTLSLEPWTPSV--PGRLGKSSDRTTSVFGQSXAVNNWAKGHYTEG 449
+ + LEP G + + G+ A NN+A+GHYT G
Sbjct: 61 HVPRAVF-VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIG 111
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 54.0 bits (124), Expect = 4e-08
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPD 385
N +++E GK+VPRAV VDLEP +D VR+G + Q+F P+
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPE 90
Score = 43.6 bits (98), Expect = 6e-05
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDL-QLNASMSTITKLQGAST 299
MRE + I GQ G Q+G WE+ EHGI G D + + + +T GA
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 300 SREL*WWTLSLEPWTPSV--PGRLGKSSDRTTSVFGQSXAVNNWAKGHYTEG 449
+ + LEP G + + G+ A NN+A+GHYT G
Sbjct: 61 HVPRAVF-VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIG 111
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 52.8 bits (121), Expect = 1e-07
Identities = 20/41 (48%), Positives = 31/41 (75%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPD 385
N +++E S G++VPRAV +DLEP +D VR+G + Q+F P+
Sbjct: 50 NTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPE 90
Score = 49.2 bits (112), Expect = 1e-06
Identities = 35/111 (31%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLNASMSTITKLQGASTS 302
MREI+ I GQ G Q+G WE+ EHGI G DS + + +S
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 303 REL*WWTLSLEPWTPSV--PGRLGKSSDRTTSVFGQSXAVNNWAKGHYTEG 449
L LEP G + + G+ A NN+A+GHYT G
Sbjct: 61 HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVG 111
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 48.0 bits (109), Expect = 3e-06
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +3
Query: 126 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 224
REI+ +Q GQCGNQIG +FW+ + EHGI G
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG 35
Score = 43.6 bits (98), Expect = 6e-05
Identities = 16/53 (30%), Positives = 33/53 (62%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFXLRTVXGG 415
R +V++ +A Y+PRA+++DLEP ++ +++G + ++ +N L GG
Sbjct: 47 RKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGG 99
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 48.0 bits (109), Expect = 3e-06
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +3
Query: 126 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 224
REI+ +Q GQCGNQIG +FW+ + EHGI G
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG 35
Score = 42.3 bits (95), Expect = 1e-04
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFXLRTVXGG 415
R +V++ +A Y+PRA+++DLEP ++ +++G + ++ +N + GG
Sbjct: 47 RKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGG 99
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 30.3 bits (65), Expect = 0.63
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFW 185
MREIV IQ G+ N +G+ FW
Sbjct: 1 MREIVTIQVGEFANFVGSHFW 21
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 129 EIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLNASMSTI 275
+I++ A + G+ GA FWEVIS + ++G S + L+ ST+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVIS-----EGMSNFAGPSSIILSDKSSTV 389
>At2g26850.1 68415.m03221 F-box family protein contains Pfam
PF00646: F-box domain; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 371
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 185 PELCSDLIPALTRLDVDDFPHDCTKNLEPP 96
P+L S ++ ++ LD+ D P DC L PP
Sbjct: 50 PDLASPVLGKMSILDLPDLPLDCILELLPP 79
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 144 QAGQCGNQIGAKFWEVISDEHGIDATGAYSG 236
QA G IG ++W +IS + G D T Y G
Sbjct: 678 QAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,638,708
Number of Sequences: 28952
Number of extensions: 220730
Number of successful extensions: 594
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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