Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1185
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    31   0.17 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   1.6  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    26   4.8  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    26   4.8  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    25   8.4  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   8.4  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    25   8.4  

>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 211 VQEILKDMASQGDYAVKHQRWPKPPELSPIYLPVSPVMP 327
           +Q IL+ +A +GD     +  PKPP +  I  P+ P  P
Sbjct: 358 LQSILRSLAIEGDDDEVAKVLPKPPSVPTIQAPIPPEAP 396


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 94  NQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI-LKDMASQGDYAVKHQ 267
           NQ S      D+D+  ASS++S A     D+D      N+       +A  GD + +H+
Sbjct: 3   NQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQHE 61


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 100 YSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAIL-NVQEILKDMASQGDYAVKHQRWP 276
           Y+D+E P D +  K S+++ +A+ +V   +   + L N   I  +  + G    +  R+P
Sbjct: 158 YTDSEAPNDSEKQKNSTLLPKAYLFVPGLENIRSYLPNRHWIESNAITTGKAVEELPRFP 217

Query: 277 KPPE 288
             P+
Sbjct: 218 DDPK 221


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 282 RFGPPLMLDCIIALAGHVLQDLLNVEDGDAFVSVIDVVP 166
           RFGPPLM    + L G V+  +++   G    S+ID  P
Sbjct: 286 RFGPPLMKTTSVVL-GLVVGMIISAATGYWDHSIIDAAP 323


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 23/87 (26%), Positives = 37/87 (42%)
 Frame = +1

Query: 55  VATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDM 234
           V T+A  A    + + +DNEIP   D   A+S          + D+ I  L+   +L  +
Sbjct: 386 VKTAAELASLQNVTETTDNEIPNSPDFLDAAS----------EEDEHIPSLDSSSLLTPL 435

Query: 235 ASQGDYAVKHQRWPKPPELSPIYLPVS 315
           A     A +  ++  P   SP+  P S
Sbjct: 436 ALPNKKAFQPVKFRVPSFSSPLVKPAS 462


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 497 GWS-DRVSELTRVDDELIDKIQVLSHVSE 414
           G+S DR+ ELTR+D   ++K+  L   S+
Sbjct: 901 GYSVDRIWELTRIDKWFLEKLMGLIRTSQ 929


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +1

Query: 172 YVDDTDKSIAILNVQEILKDMASQGDYAVKHQRWPKPPELSPIYLPVS 315
           +V   D ++ +L+   I K          KH   P PP  S   LP+S
Sbjct: 114 FVQKLDSTLRVLDYNAINKFSIDLTPVQRKHVDMPPPPVFSQTSLPMS 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,609
Number of Sequences: 5004
Number of extensions: 44173
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)