Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1185
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 33 0.23
08_02_0602 + 19183549-19184919 32 0.40
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084... 30 1.2
08_01_0510 + 4455805-4456637,4457837-4457912 29 2.8
07_01_0310 + 2209084-2209554 29 3.7
05_04_0062 + 17607290-17608852 28 4.9
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172... 28 4.9
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 28 6.5
08_02_0781 - 21157715-21157783,21158869-21159087,21161181-211613... 28 6.5
08_01_0263 + 2141679-2141835,2142033-2142448 28 6.5
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 27 8.6
05_01_0156 - 1048689-1049567 27 8.6
04_01_0122 + 1267048-1267149,1267764-1267855,1268137-1268234,126... 27 8.6
03_06_0765 + 36104604-36105689 27 8.6
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 32.7 bits (71), Expect = 0.23
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 228 GHGQPGRLCSQASAVAQTAGIIAHLSAGIPG 320
G GR S+ + V +T G+++ +S+G+PG
Sbjct: 97 GRAPAGRAASKGAGVGETLGVVSRVSSGVPG 127
>08_02_0602 + 19183549-19184919
Length = 456
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 249 LCSQASAVAQTAGIIAHLSAGIPGDACAAANVINS 353
+C QA+A + + A L AG+ DACA +V +S
Sbjct: 189 MCRQAAAAGASGSVAAALPAGVLDDACADLDVTSS 223
>04_04_1536 -
34207425-34207490,34207801-34208268,34208345-34208485,
34208582-34208820,34209950-34210436
Length = 466
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 40 FLVLLVATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWD 171
FL+LL+ +A AAP ++I Y+ R +++G + A+D
Sbjct: 10 FLLLLIVGAATAAPDMSIISYNAEHGARGLEEGPTEAEARAAYD 53
>08_01_0510 + 4455805-4456637,4457837-4457912
Length = 302
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -3
Query: 494 WSDRVSELTRVDDELID--KIQVLSHVSEEG 408
W D+V ELT D+ ID +++V+SH E G
Sbjct: 69 WRDKVRELTFDIDDCIDSFEVRVISHQQERG 99
>07_01_0310 + 2209084-2209554
Length = 156
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/59 (33%), Positives = 22/59 (37%)
Frame = -1
Query: 409 GPRDCLKPXKFPDLTPSV*ELMTLAAAQASPGIPADRWAIIPAVWATADA*LHNRPGWP 233
G C D TP +TL A P IPA IPAV +A L P P
Sbjct: 7 GSSSCQAARLLADATPPAVPAVTLPPMPAIPAIPAATLPPIPAVPTVPNAALPPMPAVP 65
>05_04_0062 + 17607290-17608852
Length = 520
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +2
Query: 134 MEKLVP*SHVHGTTSMTLTKASPSSTFKRS*RTWPARAIMQSSISGGPNRRNYRP 298
+EK+ S V G + + AS SS+ RS R+ + M S+ SGGP+ Y P
Sbjct: 29 LEKIRSLSVVSGEVAGWSSSASASSS--RSARSSYYSSSMSSNASGGPHNHRYAP 81
>03_01_0218 -
1717246-1717892,1717995-1718163,1718262-1720022,
1720531-1720610,1720854-1720981,1721004-1721012,
1723701-1723742,1725891-1726002,1726358-1726514,
1726678-1726762,1727628-1727713,1727998-1728042
Length = 1106
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -1
Query: 379 FPDLTPSV*ELMTLAAAQASPGIPADRWAII---PAVWATADA*LHNRPGWPCPSRSLE 212
FPD P + L+T + PG+ + + PA W ++ +R G+P P LE
Sbjct: 811 FPDDLPPIGTLVTAPSVLIHPGVLQENSTEVPPSPASWCSSPPDEMSRGGYPSPVSPLE 869
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 201 GDAFVSVIDVVPCT*DYGTSFS 136
G F SV+D VPC DY FS
Sbjct: 107 GTGFYSVVDAVPCRRDYLKMFS 128
>08_02_0781 -
21157715-21157783,21158869-21159087,21161181-21161329,
21161694-21161932,21162045-21162229
Length = 286
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 497 GWSDRVSELTRVDDELIDKIQVLSHVSEEGT 405
G S RVSEL ++ L DK+ V+ S GT
Sbjct: 59 GVSGRVSELVEIEPVLRDKVPVIRRFSGGGT 89
>08_01_0263 + 2141679-2141835,2142033-2142448
Length = 190
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +3
Query: 219 DLEGHGQPGRLCSQASA---VAQTAGIIAHLSA-GIPGDACAAANVINSYT 359
D +G+G PG +C S+ + T G++++ SA G G A A ++ + T
Sbjct: 131 DGDGNGTPGGICIDGSSPPTIISTPGVVSYGSAPGSSGSATTALAIMAAAT 181
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 256 VKHQRWPKPPELSPIYLPVSPVMPVQP 336
++HQ P PP+ +P ++P V P P
Sbjct: 52 MQHQMAPAPPQFAPHFVPFHAVGPPPP 78
>05_01_0156 - 1048689-1049567
Length = 292
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 437 ESYQSTRHQPWSTPILCRTSPGLCGGGRIYDFE 535
E Y P +TP L +SP LCGGG +FE
Sbjct: 11 EDYIDMDLTPTTTP-LPPSSPRLCGGGGFREFE 42
>04_01_0122 +
1267048-1267149,1267764-1267855,1268137-1268234,
1268333-1268488,1268736-1269355,1269480-1269547,
1269848-1270099,1270390-1270525,1271054-1271246,
1271386-1271939
Length = 756
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -1
Query: 340 LAAAQASPGIPADRWAIIPAVWATAD 263
LAA A G P R AI A WAT D
Sbjct: 238 LAAGTAHGGAPRARLAIYKACWATPD 263
>03_06_0765 + 36104604-36105689
Length = 361
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 219 DLEGHGQPGRLCSQASAVAQTAGIIAHLSAGIPGD 323
DL+ G L Q A AQ G ++ GIPG+
Sbjct: 59 DLQADVDRGHLVGQVRAAAQCVGFFQVVNHGIPGE 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,458,673
Number of Sequences: 37544
Number of extensions: 341850
Number of successful extensions: 1156
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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