Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1185
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68004-8|CAA91989.1|  218|Caenorhabditis elegans Hypothetical pr...    31   0.62 
U37548-4|AAA79200.2|  373|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     23   4.7  
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    23   4.7  
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z68004-8|CAA91989.1|  218|Caenorhabditis elegans Hypothetical
           protein F47B10.9 protein.
          Length = 218

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 521 FFHLRTTQGWSDRVSELTRVDDELIDKIQV-LSHVSEEGTE 402
           +FH+  T  ++++ SE   +DD   D++ V LS+V  EG E
Sbjct: 50  YFHILRTGSYTEKTSEKVTLDDVYTDELVVFLSYVCPEGFE 90


>U37548-4|AAA79200.2|  373|Caenorhabditis elegans Hypothetical
           protein C54D2.1 protein.
          Length = 373

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 452 TRHQPWSTPILCRTSPGLCGGGRIYDFEAAWDAILASSDSSFLNXEYC 595
           +R +P  TP  C  +P  CG G+I            +S++  L   YC
Sbjct: 303 SREEPGCTPYNCACNPMGCGQGQIVRINFVIPGQQCNSNNQCLAGSYC 350


>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 23.4 bits (48), Expect(2) = 4.7
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +1

Query: 175 VDDTDKSI--AILNVQEILKDMASQGDYAVKHQRWPKPP 285
           ++D+D SI  ++LN Q++LK +     YA+  + W   P
Sbjct: 254 LEDSDSSIVVSVLNKQQLLKTVKHPSIYAMS-KMWISIP 291



 Score = 23.0 bits (47), Expect(2) = 4.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 91  INQYSDNEIPRDIDDGKASSVISRAWDYVDDTD 189
           INQ   N +   +DDG  + V+ +   Y+ D D
Sbjct: 205 INQMRSNLVTV-VDDGAQNPVVKKVISYLRDAD 236


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
           protein F35H10.10 protein.
          Length = 1404

 Score = 23.4 bits (48), Expect(2) = 4.7
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +1

Query: 175 VDDTDKSI--AILNVQEILKDMASQGDYAVKHQRWPKPP 285
           ++D+D SI  ++LN Q++LK +     YA+  + W   P
Sbjct: 254 LEDSDSSIVVSVLNKQQLLKTVKHPSIYAMS-KMWISIP 291



 Score = 23.0 bits (47), Expect(2) = 4.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 91  INQYSDNEIPRDIDDGKASSVISRAWDYVDDTD 189
           INQ   N +   +DDG  + V+ +   Y+ D D
Sbjct: 205 INQMRSNLVTV-VDDGAQNPVVKKVISYLRDAD 236


>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical
           protein T24B8.7b protein.
          Length = 2923

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 467 RVDDELIDKIQVLSHVSEEGTERLSEAXEVSGPDXVCVRVNDVSG 333
           ++ D L+D+++ + HV+ E  E    A + S  + V    NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764


>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical
           protein T24B8.7a protein.
          Length = 2920

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 467 RVDDELIDKIQVLSHVSEEGTERLSEAXEVSGPDXVCVRVNDVSG 333
           ++ D L+D+++ + HV+ E  E    A + S  + V    NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764


>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical
           protein T24B8.7b protein.
          Length = 2923

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 467 RVDDELIDKIQVLSHVSEEGTERLSEAXEVSGPDXVCVRVNDVSG 333
           ++ D L+D+++ + HV+ E  E    A + S  + V    NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764


>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical
           protein T24B8.7a protein.
          Length = 2920

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 467 RVDDELIDKIQVLSHVSEEGTERLSEAXEVSGPDXVCVRVNDVSG 333
           ++ D L+D+++ + HV+ E  E    A + S  + V    NDV G
Sbjct: 720 KLADPLLDRLENIRHVAHERFEASLNANQDSQSNAVFESTNDVFG 764


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,123,165
Number of Sequences: 27780
Number of extensions: 262695
Number of successful extensions: 803
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)