Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1184
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    27   3.4  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    26   5.9  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.8  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   7.8  

>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 390 YFASIPKDVFSSTTNFFLWLAIMFLYXYRRFIYVDXLSIF 271
           YF  +P    + TT  FL ++ +++   R  IYV    IF
Sbjct: 254 YFVRLPWLFLNPTTLLFLLISFVYIKPARLLIYVPLFFIF 293


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 602 LLHMYYNAPHLISLPNXFFF*EPNISSP*ISDFXQHSSAVVPTXDAMSC 456
           L+ + +N+P +       F  +P+IS+    DF +H   V    D + C
Sbjct: 346 LVSLIHNSPKMFD-ETMLFAGDPSISTALKEDFREHFKTVSALMDCVGC 393


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 333 LAIMFLYXYRRFIYVDXLSIFSCFYYD 253
           L + F Y Y +F++V   S  S +YY+
Sbjct: 205 LKLFFRYQYSQFLFVYRESFLSDYYYN 231


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 567 NQMGCIIIHVKKFSKEWKSLPFXFSRNLGMVQKVRKTLT 683
           N +  ++ ++   SK   S    FS+N G  QK RKTL+
Sbjct: 415 NIVTLVLEYLANSSKGLASKSIEFSKNRGHSQKKRKTLS 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,265
Number of Sequences: 5004
Number of extensions: 45961
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)