Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1184
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U22833-3|AAA64323.2|  387|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical
           protein C34B4.5 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +2

Query: 32  YVYKXFILNTILLFFRTLSCKYL*LFRYXSLKMDMNNPPNQSYWFVLREDQSNVILSTNN 211
           +V   F+L+T+     T S   + +F +  LK      P + +WF+L+   S  ILST N
Sbjct: 43  FVILLFVLSTVTATLLTASFLIMAVFLWNHLK------PMKFFWFLLQLTISAFILSTLN 96

Query: 212 FVNQNP 229
            V   P
Sbjct: 97  LVFNVP 102


>U22833-3|AAA64323.2|  387|Caenorhabditis elegans Hypothetical
           protein W02B3.4 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +2

Query: 458 MTLHRM*VLLQMNVVXNQKFKENLY*ALKKRIXXAKKSNGVHYNTCEEVFKGVEIT 625
           + L  M +  Q  V  NQ  +EN Y      +   K+S  +HY TCE     +  T
Sbjct: 13  LLLSSMLIFYQTTVFRNQLNEENDYTG-GPIVPFMKRSLALHYQTCESFLNSLNTT 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,496,328
Number of Sequences: 27780
Number of extensions: 251436
Number of successful extensions: 516
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)