Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1183
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    65   1e-11
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    56   5e-09
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    31   0.21 
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    28   1.5  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.5  
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    26   6.0  
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    26   6.0  

>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 37/90 (41%), Positives = 51/90 (56%)
 Frame = +2

Query: 239 SNKNNITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRH 418
           S K  I SP++    GPY+QAI A+  +Y SG + +  + +++ G    QTRQ L NL+ 
Sbjct: 37  STKTPINSPKL-SSAGPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQE 94

Query: 419 VLEAGGAXLESXVKTTVXLASMDDFQTFNK 508
           VL   G+ L   VK  + LA MDDF   NK
Sbjct: 95  VLTEAGSSLNKIVKVNIFLADMDDFAAVNK 124



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +1

Query: 505 QIYAEYFPKACPARMTYEVXRLPL---GAAVEIEAIXL 609
           ++Y E  P   PAR    V  +PL   G  +EIE I L
Sbjct: 124 KVYTEVLPDPKPARSCVAVKTVPLSTQGVKIEIECIAL 161


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 56.0 bits (129), Expect = 5e-09
 Identities = 27/75 (36%), Positives = 41/75 (54%)
 Frame = +2

Query: 284 GPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGAXLESXVKT 463
           GPY+QA+ +   ++ SG   + +D   V G  + QTR  ++NL  VL   G+ LE  VK 
Sbjct: 15  GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73

Query: 464 TVXLASMDDFQTFNK 508
            + L  +DDF   N+
Sbjct: 74  NIFLTDIDDFAAMNE 88



 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +1

Query: 505 QIYAEYFPKACPARMTYEVXRLPL---GAAVEIEAI 603
           ++Y E  P   PAR T    ++PL   G  +EIE I
Sbjct: 88  EVYKEMLPDPMPARTTVAAGKIPLSSKGGKIEIECI 123


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +2

Query: 281 VGPYSQAILADKTLYISGILGL 346
           +GPYSQ+I A+  ++ISG +GL
Sbjct: 421 IGPYSQSICANGVVFISGQIGL 442


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 368 CGGAEAQTRQALDNLRHVLEAGGAXLESXVK 460
           C G +  T++ +D LR  ++AGG   E  +K
Sbjct: 88  CRGNQLMTQEEIDELRANIKAGGLRAEEAIK 118


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 575 WEQLWRSRPSXFAETLVIAXGRPMP 649
           W QLWR  P     TLV     P+P
Sbjct: 371 WMQLWRILPPNTLSTLVNTASSPIP 395


>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 445 GVGRENYCXVG*HGRLPNFQQIYAEYFPKACP 540
           G GR  Y  VG   + P  + IY EY  K CP
Sbjct: 26  GAGRRWYKDVGLGFKTPA-EAIYGEYVDKKCP 56


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 445 GVGRENYCXVG*HGRLPNFQQIYAEYFPKACP 540
           G GR  Y  VG   + P  + IY EY  K CP
Sbjct: 26  GAGRRWYKDVGLGFKTPA-EAIYGEYVDKKCP 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,397
Number of Sequences: 5004
Number of extensions: 52067
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)