Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1183
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102... 52 6e-07
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 44 1e-04
07_03_1393 - 26245105-26246862 33 0.22
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9... 30 2.0
12_01_0355 - 2704909-2705745 29 3.5
03_06_0110 - 31727376-31727381,31727554-31727664,31728071-317281... 29 3.5
07_01_0548 - 4061829-4062956 29 4.7
07_02_0027 - 11963040-11963294 28 6.2
12_01_0112 - 860330-861946 28 8.2
09_02_0027 + 3105963-3106276,3106298-3107027,3107069-3107134,310... 28 8.2
06_03_0117 + 16826133-16826600,16826650-16827201,16827310-168274... 28 8.2
01_01_1073 + 8456426-8456677,8457039-8457152,8457546-8457710 28 8.2
>07_03_0593 +
19808148-19808310,19809416-19809531,19810129-19810202,
19810286-19810335,19810498-19810592
Length = 165
Score = 51.6 bits (118), Expect = 6e-07
Identities = 29/82 (35%), Positives = 45/82 (54%)
Frame = +2
Query: 281 VGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGAXLESXVK 460
+GPYSQAI A+ +++SG+LGL+ + + N+ +L+A GA S VK
Sbjct: 69 LGPYSQAIKANNMVFVSGVLGLN--------------PEVMKNMGEILKASGASYSSVVK 114
Query: 461 TTVXLASMDDFQTFNKSMQNIF 526
TT+ LA + DF+ N+ F
Sbjct: 115 TTIMLADLQDFKKVNEIYAKYF 136
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +1
Query: 505 QIYAEYFPKACPARMTYEVXRLPLGAAVEIEAI 603
+IYA+YFP PAR TY+V LPL A +EIE I
Sbjct: 130 EIYAKYFPAPAPARSTYQVAALPLNARIEIECI 162
>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 281 VGPYSQAILADKTLYISGILGLDRDAQMVC-GGAEAQTRQALDNLRHVLEAGGAXLES 451
+GPYSQA L + LY++G LGLD +C GG A+ AL N V A G + S
Sbjct: 870 IGPYSQATLHGEILYMAGQLGLDPPTMKLCPGGPTAELEFALRNSEAVANAFGCSIFS 927
>07_03_1393 - 26245105-26246862
Length = 585
Score = 33.1 bits (72), Expect = 0.22
Identities = 28/108 (25%), Positives = 45/108 (41%)
Frame = +2
Query: 326 ISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGAXLESXVKTTVXLASMDDFQTFN 505
I+G + D D V G +AQ +Q NL + L V + + + N
Sbjct: 442 IAGRMDWDYDGLHVIRGWKAQNKQMYPNLD--ADTSPEALVDKVPKLIKQPMRNLYIATN 499
Query: 506 KSMQNIFLKLALLE*HTKSXDYRWEQLWRSRPSXFAETLVIAXGRPMP 649
+ N F KL H D +++LW + + ET ++ GRP+P
Sbjct: 500 EPFYNYFDKLRSYF-HVHLLD-DYKELWSNTSEWYNETTTLSGGRPVP 545
>05_01_0002 -
8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
9802-9902,10016-10651,10820-10899,11014-11673,
11787-12041,12154-12281,12515-12669,12735-12919,
13020-13049,13164-13239,13371-13504,13703-13994,
14400-14567,14647-14745,14843-15014,15103-15281
Length = 1352
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 268 NISTSRSVQSSNFSGQDLIHFWNSRIGSRCTDGLRXC*SADPSG 399
NIST RSV+SS+ S + H SR G+ C SA P+G
Sbjct: 816 NISTERSVESSHLSRPEQNH---SRANMEVKPGINAC-SATPAG 855
>12_01_0355 - 2704909-2705745
Length = 278
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -1
Query: 452 PTPTXRHQLQVHVADCPEPDGSALQHXRRPSVHLDPIREFQKCIRSCPLKLLDCTD 285
P P R + VAD DGS+L RP R C++S LL CT+
Sbjct: 72 PPPPVRAASWIDVADDKSKDGSSLDALLRPKSSAVK-RSASFCLKSSESSLLLCTE 126
>03_06_0110 -
31727376-31727381,31727554-31727664,31728071-31728133,
31729202-31729331,31729532-31729701,31729800-31729859,
31729941-31730018,31730108-31730197,31730275-31731118,
31731220-31731281,31731362-31731423,31731511-31731700
Length = 621
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 438 APPASSTCRRLSRA*RVCASAPPQTICASRSNPR 337
APP S C ++ + C P + +C S SNP+
Sbjct: 226 APPLSEVCSKMRKLNLACREVPSRYLCQS-SNPK 258
>07_01_0548 - 4061829-4062956
Length = 375
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 408 LSRA*RVCASAPPQTICASRSNPRIPEMYKVLSA 307
LS A ++C++ PP + +NPR+ Y L A
Sbjct: 21 LSAAAQLCSACPPAASQTAENNPRLQRAYVALQA 54
>07_02_0027 - 11963040-11963294
Length = 84
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTXRHQLQVHVADCPEPD-GSALQHXRRPSVHLDPIREFQKCI 321
TPT H +Q +V+ PD +H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQAYVSQDTPPDIDFRDRHGYSPTVSPDTVRRYESTI 53
>12_01_0112 - 860330-861946
Length = 538
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 344 LDRDAQMVCGGAEAQTRQALDNLRHVLEAGGAXLESXVKTTVXLAS 481
++RD+ GGA ++R+A + L+ GG +++ KT +A+
Sbjct: 284 VERDSAASSGGANGRSRRASLSGAGALQGGGGAMQTVAKTVDEVAA 329
>09_02_0027 +
3105963-3106276,3106298-3107027,3107069-3107134,
3107192-3107324,3108985-3109088
Length = 448
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 481 HGRLPNFQQIYAEYFPKA 534
HGR+P+FQQ E PKA
Sbjct: 165 HGRIPSFQQTRDESIPKA 182
>06_03_0117 +
16826133-16826600,16826650-16827201,16827310-16827453,
16827543-16827959
Length = 526
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 554 TKSXDYRWEQLWRSRPSXFAETLVIAXGRPMP 649
T + RW +LWRS P A+ + G P P
Sbjct: 79 TSALSTRWRRLWRSVPLVLADAHLKHTGPPPP 110
>01_01_1073 + 8456426-8456677,8457039-8457152,8457546-8457710
Length = 176
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTXRHQLQVHVADCPEPDGSAL-QHXRRPSVHLDPIREFQKCI 321
TPT H +Q ++ PD +H P+V D +R ++ I
Sbjct: 12 TPTRSHNIQAYIRQDTPPDIDLKDRHGYSPTVSPDTVRRYESAI 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,716,829
Number of Sequences: 37544
Number of extensions: 354860
Number of successful extensions: 769
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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