Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1183
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein c...    71   6e-13
At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c...    40   0.002
At4g04920.1 68417.m00715 expressed protein                             28   6.8  
At1g72870.1 68414.m08428 disease resistance protein (TIR-NBS cla...    27   9.0  

>At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein
           contains Pfam domain PF01042: Endoribonuclease L-PSP
          Length = 187

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
 Frame = +2

Query: 245 KNNITSPEIYQPVGPYSQAILADKTLYISGILGL-DRDAQMVCGGAEAQTRQALDNLRHV 421
           K  +++ +    +GPYSQAI A+  +++SG+LGL     + V    E QT Q L N+  +
Sbjct: 64  KEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVLKNMGEI 123

Query: 422 LEAGGAXLESXVKTTVXLASMDDFQTFNKSMQNIF 526
           L+A GA   S VKTT+ LA + DF+T N+     F
Sbjct: 124 LKASGADYSSVVKTTIMLADLADFKTVNEIYAKYF 158



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = +1

Query: 505 QIYAEYFPKACPARMTYEVXRLPLGAAVEIEAI 603
           +IYA+YFP   PAR TY+V  LPL A +EIE I
Sbjct: 152 EIYAKYFPAPSPARSTYQVAALPLNAKIEIECI 184


>At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein
           contains Pfam domain PF01902: Domain of unknown function
          Length = 715

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +2

Query: 281 VGPYSQAILADKTLYISGILGLDRDA-QMVCGGAEAQTRQALDNLRHVLEAGGAXLESXV 457
           +GPYSQA L    L+++G LGLD     +   GA A+  QAL N   + E+    + S  
Sbjct: 425 IGPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTNSEAIAESFNCSISSSA 484

Query: 458 KTTVXLASMDDFQTFNKSMQNIFL 529
              V   S    Q+    +   F+
Sbjct: 485 ILFVVFCSARTKQSERNQLHEKFV 508


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 239 SNKNNITSPEIYQPVGPYSQAILADKTLYIS 331
           SN+NN+TSP       P +  +  DK+LY++
Sbjct: 844 SNRNNVTSP-TQNASSPATPQVFPDKSLYLA 873


>At1g72870.1 68414.m08428 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/84 (23%), Positives = 38/84 (45%)
 Frame = +2

Query: 116 SFELLTYLHLKNKNELRRFCTGVRRQXFAQNEFSXKFE*Q*SNKNNITSPEIYQPVGPYS 295
           S E   +L  + ++  R F + + R    +   + KFE Q +      S E+ Q +    
Sbjct: 7   SSEHKVFLSFRREDTGRTFVSHLYRSLDQKEIRTYKFENQQAGDGKRISSEVKQAINESR 66

Query: 296 QAILADKTLYISGILGLDRDAQMV 367
            A++     Y+S +L LD  A+++
Sbjct: 67  IAVVVISENYVSSVLCLDVLAKII 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,125,118
Number of Sequences: 28952
Number of extensions: 277219
Number of successful extensions: 575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)