Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1182
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34652| Best HMM Match : Ank (HMM E-Value=3.8e-34)                   29   3.0  
SB_40908| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             27   9.2  
SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)           27   9.2  
SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25)          27   9.2  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_34652| Best HMM Match : Ank (HMM E-Value=3.8e-34)
          Length = 1330

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 167 EEYWRERTNPIRR--FYRKPLDVLFAKLTPMRENNVLHIIDIYLENLV*SLWLCYQHIT 337
           E+Y +ER  P++   F  +P   L A        + LHIID YL ++   ++L  +++T
Sbjct: 9   EKYRKERIEPMKGTDFPERPWSKLGADFFQHEGRHYLHIIDYYLRDI--EIYLVSKNVT 65


>SB_40908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 329 HITTLNI*ETTGQRRVVGKY*KPNQWFFLDNLDSHSNLRKPILITLXGNSR-ALLFKNNL 505
           H++     ++T + +  GKY K     F+D +D+  NL + + +T    ++ +L   NN 
Sbjct: 50  HLSEDTTYKSTERAKFKGKYDKYRNAKFIDQIDTSDNLYQEVKLTYADQAKTSLQHANNE 109

Query: 506 ITNSVV 523
           I  S++
Sbjct: 110 ILCSIL 115


>SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 155 ARERLKLDLLTIAYAKPFLHQSYQDIFPFHW 63
           A +RL  DL+T  Y + F + SY+    F W
Sbjct: 120 AEDRLYGDLITSEYREGFFNMSYKVAMGFEW 150


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 385 VLKTKPMVLPGQPGFP 432
           ++ TKP VLPG PG P
Sbjct: 879 IINTKPAVLPGLPGTP 894


>SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)
          Length = 308

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 155 ARERLKLDLLTIAYAKPFLHQSYQDIFPFHW 63
           A +RL  DL+T  Y + F + SY+    F W
Sbjct: 116 AEDRLYGDLITSEYREGFFNMSYKVAMGFEW 146


>SB_52114| Best HMM Match : Galactosyl_T (HMM E-Value=3.5e-25)
          Length = 383

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 155 ARERLKLDLLTIAYAKPFLHQSYQDIFPFHW 63
           A +RL  DL+T  Y + F + SY+    F W
Sbjct: 191 AEDRLYGDLITSEYREGFFNMSYKVAMGFEW 221


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 165  WKNIGESVLILFVVFTGNPWT 227
            W  I E++L+   +  GNPWT
Sbjct: 3023 WATISEAILLWSTMSEGNPWT 3043


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,708,148
Number of Sequences: 59808
Number of extensions: 392826
Number of successful extensions: 883
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)