Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1182
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09090.2 68414.m01015 respiratory burst oxidase protein B (Rb...    29   1.9  
At1g09090.1 68414.m01014 respiratory burst oxidase protein B (Rb...    29   1.9  
At5g51060.1 68418.m06329 respiratory burst oxidase protein C (Rb...    29   2.5  
At1g32550.1 68414.m04017 ferredoxin family protein similar to fe...    29   3.3  
At4g25090.1 68417.m03604 respiratory burst oxidase, putative / N...    28   4.3  
At3g53320.1 68416.m05883 expressed protein                             27   7.5  
At1g33010.1 68414.m04065 F-box family protein                          27   7.5  
At3g47790.1 68416.m05206 ABC transporter family protein contains...    27   10.0 

>At1g09090.2 68414.m01015 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 843

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 283 YISGKLGLIAVAMLSTHYYFKYLGNDWTKKGGWKVLKTKPMVL 411
           + S  L +I   +L  H YF YL  +W  K  W  L   P++L
Sbjct: 481 WYSHHLFVIVYVLLIVHGYFVYLSKEWYHKTTWMYLAV-PVLL 522


>At1g09090.1 68414.m01014 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 622

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 283 YISGKLGLIAVAMLSTHYYFKYLGNDWTKKGGWKVLKTKPMVL 411
           + S  L +I   +L  H YF YL  +W  K  W  L   P++L
Sbjct: 481 WYSHHLFVIVYVLLIVHGYFVYLSKEWYHKTTWMYLAV-PVLL 522


>At5g51060.1 68418.m06329 respiratory burst oxidase protein C
           (RbohC) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein C from Arabidopsis thaliana
           [gi:3242785]
          Length = 905

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 298 LGLIAVAMLSTHYYFKYLGNDWTKKGGWKVLKTKPMVL 411
           L +I   +L  H Y+ YL  DW  K  W  L   P+VL
Sbjct: 540 LFVIVYILLVAHGYYLYLTRDWHNKTTWMYL-VVPVVL 576


>At1g32550.1 68414.m04017 ferredoxin family protein similar to
           ferredoxin from Synechocystis sp. [GI:48019]; contains
           Pfam profile PF00111 2Fe-2S iron-sulfur cluster binding
           domain
          Length = 181

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 121 LLTPSPFCISHTKTSFPFT-GYATNYRHRFNTRCXCHF 11
           L+ P  FC S  K +FP    Y TN+R R  T   C F
Sbjct: 3   LILPCTFCTSLQKKNFPINRRYITNFR-RGATTATCEF 39


>At4g25090.1 68417.m03604 respiratory burst oxidase, putative /
           NADPH oxidase, putative similar to respiratory burst
           oxidase protein A from Arabidopsis thaliana, gb:AF055353
           [gi:3242781], protein D [gi:3242789]; contains Pfam
           profile PF01794 Ferric reductase like transmembrane
           component
          Length = 849

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 298 LGLIAVAMLSTHYYFKYLGNDWTKKGGWKVL 390
           L +I   +L  H Y+ YL  +W KK  W  L
Sbjct: 493 LFVIVYILLVLHGYYIYLNKEWYKKTTWMYL 523


>At3g53320.1 68416.m05883 expressed protein
          Length = 553

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 391 KTKPMVLPGQPGFPFKSEKTDSDYAEXKFKSS 486
           + KP VLP +PG PFKS    SD ++ +  SS
Sbjct: 294 RAKP-VLP-KPGVPFKSSSRSSDASKNEMTSS 323


>At1g33010.1 68414.m04065 F-box family protein
          Length = 361

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 353 ETTGQRRVVGKY*KPNQWFFLDNLDSHSNLRKPILI 460
           ++ G+ R + K  +  +WFF  +L   +   KP L+
Sbjct: 25  KSVGRLRCLSKLWRKGEWFFFSSLQPQNLYEKPFLV 60


>At3g47790.1 68416.m05206 ABC transporter family protein contains
           Pfam domain, PF00005: ABC transporter
          Length = 901

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 455 ESVFSDLNGNPGCPGRTIGLVFSTFQPPFF 366
           ++ F+D++G  GC  +T GL +ST +   F
Sbjct: 53  DTQFNDVHGQCGCNEKTCGLRYSTSEQAAF 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,218,525
Number of Sequences: 28952
Number of extensions: 278236
Number of successful extensions: 734
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)