Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1181
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    30   0.24 
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    27   2.9  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   3.9  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    26   3.9  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    26   5.1  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    25   6.8  
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    25   9.0  

>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 406 FFLDNLDSHSNLRKPILITLKGNSRALVI*KQFN 507
           FF+D+LDSH N    IL +L   S   VI +Q N
Sbjct: 311 FFIDSLDSHPNNPTGILYSLDSESNTFVI-RQMN 343


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 283 IYNVQHVVLPHWGKFRKEYVQGFPVKTTNRIST 185
           + N+  ++LP    F+K ++ GFP + TN + T
Sbjct: 285 VQNIHKILLPI---FQKNFLTGFPAEITNLVLT 314


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 235 CETYPNAGEQRAAHYRYISGKLGLIAVAMLSTHYYFKYLGNDWTK 369
           C T PN          Y+S +  LIA A   TH +   +GND+ +
Sbjct: 264 CRT-PNNRPCNLTRQEYVSRERHLIATAFGLTHTFNTKVGNDFVR 307


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 526 ENYTVCN*IVFK*QELLNFLSA*SESVFSDLNGNPGCPGRTIGLVFRLSNHPSL 365
           E+   CN   F+     +F++  S  +   L G    P + IGL+ ++ NHP L
Sbjct: 523 EHVVFCNLSEFQLSLYKHFIT--SPEINKILRGTGSQPLKAIGLLKKICNHPDL 574


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 307 LNQVFQIYIYNVQHVVLPHWGKFRKE 230
           L+ V +I  Y    V+  HWGKF  E
Sbjct: 642 LSFVQKIIYYTTSEVIETHWGKFMGE 667


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 390 KTKPMVLPGQPGFPFKSEKTDSDYAERKFKSSCY 491
           K KP+V PG P F F +    S +   +F SS +
Sbjct: 193 KEKPLVPPGAPRFGFSAPALGSSF---QFNSSAF 223


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 277 YRYISGKLGLIAVAMLSTHYYFKYLGNDWTKKGGWKV 387
           Y+ ++  LG + VA +S  +Y      +W  K  W +
Sbjct: 201 YQNLANSLGKLYVAPVSPWFYTHLSYKNWAYKSDWLI 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,454
Number of Sequences: 5004
Number of extensions: 55166
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)