Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1181
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0118 - 22889608-22890816,22891990-22892261,22892306-228931...    32   0.43 
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260...    29   3.0  
04_04_1331 - 32706043-32707248,32707411-32707652,32707737-327085...    29   4.0  
02_03_0360 + 18104948-18106159                                         29   4.0  
01_06_1258 + 35806557-35806932,35807517-35807679,35807789-358078...    28   7.0  
05_04_0005 + 17063717-17063866,17065737-17065855,17066903-170672...    27   9.2  

>04_04_0118 -
           22889608-22890816,22891990-22892261,22892306-22893131,
           22893311-22893534,22893620-22893936,22894035-22894294,
           22894723-22894923,22895015-22895190,22895445-22895718
          Length = 1252

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 247 PNAGEQRAAHYRYISGKLGLIA-VAMLSTHYYFKYLGNDWTKK 372
           PNA E++   Y +I    GL A VA L  HY+F  +G + T +
Sbjct: 710 PNAMERKTREYVFIYIGTGLYAVVAYLVQHYFFSIMGENLTTR 752


>11_05_0081 -
           18924353-18924462,18925068-18925187,18925569-18926086,
           18927392-18927471,18927680-18927782,18928084-18928295,
           18928392-18929210,18929331-18929444,18929935-18929983,
           18930115-18930271,18930354-18930807,18930938-18931147
          Length = 981

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 304 LIAVAMLSTHYYFKYLGNDWTKKGGW 381
           +I  A+L  H Y+ +L  DW KK  W
Sbjct: 578 VIVYALLIVHGYYLFLTKDWYKKTTW 603


>04_04_1331 -
           32706043-32707248,32707411-32707652,32707737-32708562,
           32708640-32708863,32708946-32709262,32709381-32709443,
           32709465-32709640,32710609-32710985,32711416-32711470,
           32711614-32711913
          Length = 1261

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 247 PNAGEQRAAHYRYISGKLGLIA-VAMLSTHYYFKYLGNDWTKK 372
           PN  E++   Y +I    GL A VA L  HY+F  +G + T +
Sbjct: 730 PNEMEKKTKLYVFIYIGTGLYAVVAYLVQHYFFSIMGENLTTR 772


>02_03_0360 + 18104948-18106159
          Length = 403

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 65  SERERCLGMTDAERAWRKQWLKDQVLAAHEPVHVEEYW 178
           SER + L   DAER    + L++Q+LA H  V V + W
Sbjct: 363 SERSKDLDEEDAERYEAIKNLREQMLAGHGFVLVSQEW 400


>01_06_1258 +
           35806557-35806932,35807517-35807679,35807789-35807837,
           35807943-35808866,35808954-35809049,35809142-35809257,
           35809345-35809447,35809570-35809658,35809750-35809900,
           35809995-35810141,35810238-35810366,35810451-35810529,
           35810616-35810725
          Length = 843

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 304 LIAVAMLSTHYYFKYLGNDWTKKGGW 381
           ++A  +L  H YF +L  +W KK  W
Sbjct: 481 VLAYVLLVVHSYFIFLTREWYKKTTW 506


>05_04_0005 +
           17063717-17063866,17065737-17065855,17066903-17067218,
           17067579-17067722,17067909-17067926,17068853-17068954,
           17069358-17069461,17069543-17069669,17069809-17069961,
           17070261-17070361,17070538-17070739,17071245-17071469
          Length = 586

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 286 YIYNVQHVVLPHWGKFRKEYVQGFPVKTTNRISTLS 179
           Y+ N+QH V+P W + R+ Y++         + T S
Sbjct: 322 YLVNMQHTVIPSWYQ-REGYIKAMATLIEKELRTFS 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,675,253
Number of Sequences: 37544
Number of extensions: 320062
Number of successful extensions: 707
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)