Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1181
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53320.1 68416.m05883 expressed protein                             32   0.27 
At3g28130.2 68416.m03511 nodulin MtN21 family protein similar to...    29   2.5  
At3g28130.1 68416.m03510 nodulin MtN21 family protein similar to...    29   2.5  
At3g24040.1 68416.m03019 glycosyltransferase family 14 protein /...    29   3.3  
At1g09090.2 68414.m01015 respiratory burst oxidase protein B (Rb...    28   4.4  
At1g09090.1 68414.m01014 respiratory burst oxidase protein B (Rb...    28   4.4  
At4g25090.1 68417.m03604 respiratory burst oxidase, putative / N...    27   7.7  

>At3g53320.1 68416.m05883 expressed protein
          Length = 553

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +3

Query: 384 SLKTKPMVLPGQPGFPFKSEKTDSDYAERKFKSSC 488
           S + KP VLP +PG PFKS    SD ++ +  SSC
Sbjct: 292 SRRAKP-VLP-KPGVPFKSSSRSSDASKNEMTSSC 324


>At3g28130.2 68416.m03511 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 230

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 432 MGIQVVQEEPLVWFLDFPTTLLCPVVS*IF 343
           +GI   +  P +W + F  TL+C VV  IF
Sbjct: 110 IGIVAEKNNPSIWIIHFDITLVCIVVGGIF 139


>At3g28130.1 68416.m03510 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 269

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 432 MGIQVVQEEPLVWFLDFPTTLLCPVVS*IF 343
           +GI   +  P +W + F  TL+C VV  IF
Sbjct: 149 IGIVAEKNNPSIWIIHFDITLVCIVVGGIF 178


>At3g24040.1 68416.m03019 glycosyltransferase family 14 protein /
           core-2/I-branching enzyme family protein contains Pfam
           profile: PF02485 Core-2/I-Branching enzyme
          Length = 417

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 372 GWLESLKTKPMVLPGQPGFPFKSEKTDSDYAERK 473
           GW ES K KP+++   PG  +  EKTD  +A +K
Sbjct: 203 GWKESRKLKPVIV--DPGL-YLVEKTDMFFASQK 233


>At1g09090.2 68414.m01015 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 843

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 283 YISGKLGLIAVAMLSTHYYFKYLGNDWTKKGGW 381
           + S  L +I   +L  H YF YL  +W  K  W
Sbjct: 481 WYSHHLFVIVYVLLIVHGYFVYLSKEWYHKTTW 513


>At1g09090.1 68414.m01014 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 622

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 283 YISGKLGLIAVAMLSTHYYFKYLGNDWTKKGGW 381
           + S  L +I   +L  H YF YL  +W  K  W
Sbjct: 481 WYSHHLFVIVYVLLIVHGYFVYLSKEWYHKTTW 513


>At4g25090.1 68417.m03604 respiratory burst oxidase, putative /
           NADPH oxidase, putative similar to respiratory burst
           oxidase protein A from Arabidopsis thaliana, gb:AF055353
           [gi:3242781], protein D [gi:3242789]; contains Pfam
           profile PF01794 Ferric reductase like transmembrane
           component
          Length = 849

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 298 LGLIAVAMLSTHYYFKYLGNDWTKKGGW 381
           L +I   +L  H Y+ YL  +W KK  W
Sbjct: 493 LFVIVYILLVLHGYYIYLNKEWYKKTTW 520


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,154,820
Number of Sequences: 28952
Number of extensions: 276626
Number of successful extensions: 686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)