Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1179
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    68   1e-12
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    28   1.0  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    27   1.8  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   3.2  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.2  
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    26   4.2  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   7.3  
SPAC5H10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.3  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   7.3  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.7  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   9.7  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 34/76 (44%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
 Frame = +3

Query: 225 YLCSREGW*DA-EVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKTLQI 401
           Y+C R+      +VVI+D+ DP+N +RRPISADS I++P  K+IALK      AQ+ LQ+
Sbjct: 37  YVCVRDNPNGVNQVVIVDLEDPSNVLRRPISADSVILHPKKKIIALK------AQRQLQV 90

Query: 402 FNIEMKSKMKAHTMTR 449
           F++E K+K+ ++ M +
Sbjct: 91  FDLEAKAKINSYVMNQ 106



 Score = 59.7 bits (138), Expect = 3e-10
 Identities = 26/42 (61%), Positives = 33/42 (78%)
 Frame = +1

Query: 115 MAQVLPIRFQEHLQLTNVGINPASISFNTLTMESDKFICVRE 240
           MAQ LPIRF E LQL +VGI P+S  F  +T+ESDK++CVR+
Sbjct: 1   MAQQLPIRFSEVLQLASVGIQPSSFGFANVTLESDKYVCVRD 42


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 297 IRRPISADSA-IMNPASKVIAL-KGKAGVEAQKTLQIFNIEMKSKMKAHTMTRRHWFLE 467
           IR  ++ + A +++  SK I + +G+  +E +   +I+NI ++   K    T + W  E
Sbjct: 206 IRADVTREPAKVVSAGSKQITVERGELEIEREMRARIYNIHLQIFQKVQLETAKRWTFE 264


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +2

Query: 407 HRDEIQNEGAHHDPKTLVSGSGFH*THSLWSPRCG 511
           H  EI +     D KTLVSGSG   T  LW    G
Sbjct: 375 HEQEIYSLDFSKDGKTLVSGSGDR-TVCLWDVEAG 408


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 311 DWSSNWICWIC 279
           DW+ NW+ W C
Sbjct: 22  DWAKNWVFWTC 32


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 299 NWICWICHINNDNFCVSPTFSRTQINLSDSMVRVLK-EIEAGLIPTLVSCKCS 144
           NWI  I ++ N  F     +++   +L      +LK E++  ++P LV+C CS
Sbjct: 87  NWI--ITYLENSEF-TKENYAQMINSLYRYQDAILKSELKDSILPKLVNCACS 136


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 342 SKVIALKGKAGVEAQKTLQIFNIEMKSKMKAH 437
           S  +A KG   V  + T+ + NI+   K+ AH
Sbjct: 341 SASLANKGATAVTIKDTIMVINIQSNRKISAH 372


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 137 RIGNTCAMFIDHSVLHKPKTKKRAT 63
           ++GN   M + H ++H P T+ RAT
Sbjct: 12  KVGN---MLLQHRIVHAPMTRLRAT 33


>SPAC5H10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 89

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 490 RVCSVKSTSRNQCLRVMVCAFILDFI 413
           +V S++STS N C+  + C F   FI
Sbjct: 46  KVSSMESTSYNGCIENLDCKFRKSFI 71


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 257 CVSPTFSRTQINLSDSMVRVLKEIEAGLIPTLVSC 153
           C SP  S T   L+     ++ + + G  P L+SC
Sbjct: 109 CTSPNDSSTWDTLTKLKNEIINDFDKGNKPLLISC 143


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 122 KYYRYGFKNIYSLPMWESILLLFLSTLSPWNRTSLSVFARRLVRRRSCHY*YGRSNK 292
           K  R     IY+L     IL+ FLS+ S   R+  S+   +LV   + +  YG+ +K
Sbjct: 168 KQDRVFLSEIYAL----KILVEFLSSKSQQERSDTSIVIGQLVGLEALYEKYGKDSK 220


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 281 CHINNDNFCVSP 246
           CH++  N CVSP
Sbjct: 71  CHVSGSNLCVSP 82


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 185 LFLSTLSPWNRTSLSVFARRL 247
           LFLS++SP +R S++ F R L
Sbjct: 365 LFLSSISPSHRYSVAFFLRSL 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,237
Number of Sequences: 5004
Number of extensions: 46611
Number of successful extensions: 137
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)