Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1179
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 83 1e-16
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 83 1e-16
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 33 0.20
01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147... 32 0.26
09_04_0573 + 18636083-18636237,18637842-18638365,18638420-186385... 29 1.8
04_04_0764 - 27889257-27889394,27889472-27890128,27904516-279045... 29 2.4
04_01_0011 + 207319-207605,207935-208184,208559-208729 28 4.3
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335... 28 5.6
01_06_0211 + 27571069-27571128,27571563-27571706 28 5.6
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688... 27 7.5
09_02_0056 + 3691698-3691828,3691950-3692106 27 9.9
04_03_0361 + 14912420-14912720,14912945-14913117,14913474-149137... 27 9.9
02_01_0701 + 5238179-5238461,5238540-5238949,5240413-5240793,524... 27 9.9
>12_01_0029 +
248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 83.0 bits (196), Expect = 1e-16
Identities = 39/73 (53%), Positives = 52/73 (71%)
Frame = +3
Query: 225 YLCSREGW*DAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKTLQIF 404
Y+C RE VVI+DMA P P+RRPI+ADSA+MNP ++++ALK + Q LQIF
Sbjct: 38 YICVRETSPQNSVVIVDMAMPAQPLRRPITADSALMNPNTRILALKAQIPGTTQDHLQIF 97
Query: 405 NIEMKSKMKAHTM 443
NIE K+K+K+H M
Sbjct: 98 NIEAKTKIKSHQM 110
Score = 51.6 bits (118), Expect = 4e-07
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 1/139 (0%)
Frame = +1
Query: 130 PIRFQEHLQLTNVGINPASISFNTLTMESDKFICVREKVGETXXXXXXXXXXXXXXXXXX 309
PI +E L LT++GI P ++F +TMES+K+ICVRE +
Sbjct: 7 PIAMREALTLTSLGIAPQFVTFTHVTMESEKYICVRETSPQNSVVIVDMAMPAQPLRRPI 66
Query: 310 XXXTLLS*IQXXXXXXXXXXXXXXXXXHFKSSTSR*NPK*RRTP*PEDIGFWKWISLNTL 489
+ L H + K + PE + FWKWI+ L
Sbjct: 67 TADSALM-NPNTRILALKAQIPGTTQDHLQIFNIEAKTKIKSHQMPEQVVFWKWITPKLL 125
Query: 490 ALVTKMWC-PLAMEGDSTP 543
LVT+ ++EGDS P
Sbjct: 126 GLVTQTSVYHWSIEGDSEP 144
>11_01_0030 +
233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 83.0 bits (196), Expect = 1e-16
Identities = 39/73 (53%), Positives = 52/73 (71%)
Frame = +3
Query: 225 YLCSREGW*DAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKTLQIF 404
Y+C RE VVI+DMA P P+RRPI+ADSA+MNP ++++ALK + Q LQIF
Sbjct: 38 YICVRETSPQNSVVIVDMAMPAQPLRRPITADSALMNPNTRILALKAQIPGTTQDHLQIF 97
Query: 405 NIEMKSKMKAHTM 443
NIE K+K+K+H M
Sbjct: 98 NIEAKTKIKSHQM 110
Score = 51.6 bits (118), Expect = 4e-07
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 1/139 (0%)
Frame = +1
Query: 130 PIRFQEHLQLTNVGINPASISFNTLTMESDKFICVREKVGETXXXXXXXXXXXXXXXXXX 309
PI +E L LT++GI P ++F +TMES+K+ICVRE +
Sbjct: 7 PIAMREALTLTSLGIAPQFVTFTHVTMESEKYICVRETSPQNSVVIVDMAMPAQPLRRPI 66
Query: 310 XXXTLLS*IQXXXXXXXXXXXXXXXXXHFKSSTSR*NPK*RRTP*PEDIGFWKWISLNTL 489
+ L H + K + PE + FWKWI+ L
Sbjct: 67 TADSALM-NPNTRILALKAQIPGTTQDHLQIFNIEAKTKIKSHQMPEQVVFWKWITPKLL 125
Query: 490 ALVTKMWC-PLAMEGDSTP 543
LVT+ ++EGDS P
Sbjct: 126 GLVTQTSVYHWSIEGDSEP 144
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 32.7 bits (71), Expect = 0.20
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 371 SFAFQSNDFTSWIHDSRVCTDWSSNWICWICHINNDNFCVSPTFS 237
SF F ++ W++D V T WS + C ++DN C P+F+
Sbjct: 394 SFKFLVDNLAIWLNDGVVLTGWSGITVSIHCG-DDDNSCAFPSFT 437
>01_03_0107 -
12613491-12613538,12613906-12614139,12614682-12614713,
12616021-12616176,12617972-12618159,12618242-12618324,
12618821-12618976,12620320-12621162,12621197-12621550,
12621962-12623125
Length = 1085
Score = 32.3 bits (70), Expect = 0.26
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 410 DVEDLKCFLSFNTSFAFQSNDFTSWIHDSRVCTDWSSNWIC 288
D E F+ FN+SF + DF +S CTD + +IC
Sbjct: 340 DFEGHALFIGFNSSFFLREEDFPMLTPNSVYCTDDTVTYIC 380
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 410 DVEDLKCFLSFNTSFAFQSNDFTSWIHDSRVCTDWSSNWI 291
D + F+ FN+SF + DF +S CTD S +I
Sbjct: 705 DFDGRALFIGFNSSFFLRVEDFPMLAPNSVYCTDDSMEYI 744
>09_04_0573 +
18636083-18636237,18637842-18638365,18638420-18638529,
18638639-18638677,18638724-18638764,18638862-18638960,
18639405-18639576
Length = 379
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -1
Query: 377 NTSFAFQSNDFTSWIHDSRVCTDWSSNWICWICHINNDNFCVSPTFSRTQINLSD--SMV 204
NT + TS+ H +VCTD+S C +C + D+ F + SD MV
Sbjct: 200 NTDSPQTTESSTSYAHGKKVCTDYSVT-ACIVCSLVFDSHGNPQAFLEMEGACSDLWLMV 258
Query: 203 RVLKEI 186
VL +I
Sbjct: 259 HVLGQI 264
>04_04_0764 -
27889257-27889394,27889472-27890128,27904516-27904572,
27904935-27905032,27905047-27905113
Length = 338
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 333 NPASKVIALKGKAGVEAQKTLQ 398
NPA KV+A+ AG+E+QK L+
Sbjct: 213 NPAEKVVAVPMTAGIESQKLLK 234
>04_01_0011 + 207319-207605,207935-208184,208559-208729
Length = 235
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 458 VSGSGFH*THSLWSPRCGVHWRWKATRHP 544
+SG F+ T LW P+ H W + RHP
Sbjct: 144 MSGFAFNST-MLWDPKLRSHLAWNSIRHP 171
>05_01_0425 -
3347604-3347708,3348394-3348466,3349917-3350581,
3350609-3351088,3351253-3351534
Length = 534
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 543 GCRVAFHRQWTPHLGD 496
G RVA HR W+P +GD
Sbjct: 426 GSRVAAHRAWSPSVGD 441
>01_06_0211 + 27571069-27571128,27571563-27571706
Length = 67
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 125 YYRYGFKNIYSLPMWE 172
Y+ YG+ NI+ L MWE
Sbjct: 7 YHTYGYNNIFILDMWE 22
>01_03_0103 -
12567986-12568141,12568307-12568442,12568751-12568824,
12568932-12569175,12569480-12569766,12570618-12571103,
12571348-12571459,12571540-12571745,12573071-12573276,
12573831-12574162,12574284-12574825,12574967-12576308,
12576386-12576457,12578438-12578505,12579011-12580174
Length = 1808
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 410 DVEDLKCFLSFNTSFAFQSNDFTSWIHDSRVCTD 309
D E F+ FN+SF + DF +S CTD
Sbjct: 340 DFEGRVLFIGFNSSFFLRVEDFPMLTPNSVYCTD 373
>09_02_0056 + 3691698-3691828,3691950-3692106
Length = 95
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -1
Query: 539 VESPSIASGHHILVTRASVFSEIHFQKPMSSGHGVRLHFGFHLDVEDLKCFLSF 378
V SP SG + V++ VF+ M+S +G + F L + D+KCFL F
Sbjct: 5 VGSPGTWSGMSLRVSQC-VFAGASVVA-MASAYGFSNYTAFWLSLLDVKCFLYF 56
>04_03_0361 +
14912420-14912720,14912945-14913117,14913474-14913779,
14913862-14913936,14913976-14914191,14914741-14915527,
14915587-14915681
Length = 650
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = -1
Query: 470 HFQKPMSSGHGVRLHFGFHLDVEDLKCFLSFNTSFAFQSNDFTSWIHDSRVCTDWSSNW 294
H +S H V+ H+ +++ F+ F F + ++HD RV D S +
Sbjct: 552 HIPMQVSKDHLVQHICRHHITTQNVMACCDFDMIFTFVLAGWPGFVHDMRVFNDAMSTY 610
>02_01_0701 +
5238179-5238461,5238540-5238949,5240413-5240793,
5241112-5241244,5241495-5241622,5241714-5241914
Length = 511
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 276 MADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKTLQIFNIEMKSKM 428
+AD +NPI ++ SAI+ S V G+A + AQ + I E S +
Sbjct: 348 LADASNPIMAQVAFLSAIV--GSDVAVAAGQAAISAQSQVDISASETDSSI 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,766,768
Number of Sequences: 37544
Number of extensions: 297449
Number of successful extensions: 812
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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