Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1179
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...    77   1e-14
AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical ...    28   3.9  
U23514-6|AAC46544.2|  816|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    27   8.9  
AF038606-7|AAB92021.1|  344|Caenorhabditis elegans Hypothetical ...    27   8.9  

>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical
           protein T20G5.1 protein.
          Length = 1681

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 38/60 (63%), Positives = 48/60 (80%)
 Frame = +3

Query: 258 EVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKTLQIFNIEMKSKMKAH 437
           +VVIID+AD  NP RRPISADS IM+P +K++ALK      + KTLQIFNIE+K+K+KAH
Sbjct: 47  QVVIIDLADTANPTRRPISADSVIMHPTAKILALK------SGKTLQIFNIELKAKVKAH 100



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/42 (59%), Positives = 32/42 (76%)
 Frame = +1

Query: 127 LPIRFQEHLQLTNVGINPASISFNTLTMESDKFICVREKVGE 252
           LPI+F EHLQL N GI   +I+F+ +TMESDK I VRE +G+
Sbjct: 3   LPIKFHEHLQLPNAGIRVPNITFSNVTMESDKNIVVREMIGD 44



 Score = 34.7 bits (76), Expect = 0.044
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 448 EDIGFWKWISLNTLALVTKMWC-PLAMEGDSTPV 546
           ED+ +WKWIS  T+ALV+       ++EGD+ PV
Sbjct: 104 EDVVYWKWISEKTIALVSDTAVYHWSIEGDAAPV 137


>AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical
           protein Y58G8A.1 protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -1

Query: 350 DFTSWIHDSRVCTDWSSNWICWICHINNDNFCVSPTFSRTQINLS 216
           DFT+W +D + C    ++W+  +  +N  +   +  + +  I LS
Sbjct: 155 DFTNWPYDQQSCPIVITDWVYGLGQVNLSDPATAAGYGKPTIRLS 199


>U23514-6|AAC46544.2|  816|Caenorhabditis elegans Hypothetical
           protein F48E8.4 protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 425 FGFHLDV-EDLKCFLSFNTS-FAFQSNDFTSWIHDSRVCTDWSSNWICW 285
           F FH+++  D+  F    T  F  +  DFT W +D  +   +  ++I W
Sbjct: 615 FIFHMNLARDMSRFARLMTEVFVVKIQDFTKWRNDKPIAERFVEDFIVW 663


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = -1

Query: 512  HHILVTRASVFSEIHFQKPMSSGHGVRLHFGFHLDVEDLKCFLSFNTSFAFQSNDFTSWI 333
            HH+++  A V     F K   SG G  + + F++  ++L+C           +N F +  
Sbjct: 1276 HHVIL--AQVPDRCSFDKDSGSGKGYNVKWYFNM--KNLRCEQFVFEGLGGNTNQFETLS 1331

Query: 332  HDSRVCT 312
               R+CT
Sbjct: 1332 ECERICT 1338


>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 389 NTSNLQHRDEIQNEGAHHDPKTLVSGSGF 475
           N  +L H     +E  H+D  T VS SGF
Sbjct: 760 NDVDLDHEKLYMHESPHNDSDTTVSASGF 788


>AF038606-7|AAB92021.1|  344|Caenorhabditis elegans Hypothetical
           protein C04C3.6 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = -1

Query: 302 SNWICWICHINNDNFCVSPTFSRTQINLSDSMVRVLKEIEAGLIPTLVSCKCS*NRIGNT 123
           SN+  ++C I   NF +  T     I  SD  V +     AG+IP +V CK S   + NT
Sbjct: 57  SNYYHFLCAIMAGNFVLLATIFSNVI--SDRNVMIF----AGIIPGVVVCKLS-AFLVNT 109

Query: 122 CAMFI 108
            + F+
Sbjct: 110 SSFFV 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,640,767
Number of Sequences: 27780
Number of extensions: 261754
Number of successful extensions: 787
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)