Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1179
(548 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 2.7
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 21 6.2
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 21 6.2
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 21 6.2
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 21 6.2
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 21 6.2
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 21 6.2
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 21 6.2
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 21 6.2
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 6.2
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 21 6.2
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 21 8.2
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 21 8.2
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 22.6 bits (46), Expect = 2.7
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -1
Query: 356 SNDFTSWIHDSRVCTDWSSNWI 291
+ DF+SW +D+ C +W+
Sbjct: 170 ATDFSSWPYDTHRCRINFGSWV 191
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 21.4 bits (43), Expect = 6.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -1
Query: 329 DSRVCTDWSSNWICWICHINNDN 261
+ ++ + S+N+I I + NNDN
Sbjct: 78 ERKIISSLSNNYISNISNYNNDN 100
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 21.4 bits (43), Expect = 6.2
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 468 LPETNVFGSWCAPSFWISSRC*RFEVFFELQHQLCLS 358
LP+T VF P+ S+C F F H++ S
Sbjct: 169 LPQTIVFHLETHPNVTWYSQCVTFNAFPTYTHEITYS 205
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 6.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 347 SHCFERQSWC*SSKNTSNLQHRDEIQNEG 433
S F+R S C S S + R+ +N+G
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDG 249
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 6.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 347 SHCFERQSWC*SSKNTSNLQHRDEIQNEG 433
S F+R S C S S + R+ +N+G
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDG 249
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 6.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 347 SHCFERQSWC*SSKNTSNLQHRDEIQNEG 433
S F+R S C S S + R+ +N+G
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDG 249
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 6.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 347 SHCFERQSWC*SSKNTSNLQHRDEIQNEG 433
S F+R S C S S + R+ +N+G
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDG 249
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.4 bits (43), Expect = 6.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 347 SHCFERQSWC*SSKNTSNLQHRDEIQNEG 433
S F+R S C S S + R+ +N+G
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDG 249
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.4 bits (43), Expect = 6.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 347 SHCFERQSWC*SSKNTSNLQHRDEIQNEG 433
S F+R S C S S + R+ +N+G
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDG 249
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.4 bits (43), Expect = 6.2
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = +1
Query: 124 VLPIRFQEHLQLTNVGINPASISFN 198
+L + + + L N G P ++S+N
Sbjct: 81 ILAVNAEADITLKNAGTPPEAVSYN 105
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 21.4 bits (43), Expect = 6.2
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = +1
Query: 124 VLPIRFQEHLQLTNVGINPASISFN 198
+L + + + L N G P ++S+N
Sbjct: 81 ILAVNAEADITLKNAGTPPEAVSYN 105
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.0 bits (42), Expect = 8.2
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = -2
Query: 298 IGFVGSAISIMTTSASHQPSREH 230
+G+ G A+ +++ QP R H
Sbjct: 90 VGYKGRALVVVSCVTKDQPYRPH 112
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.0 bits (42), Expect = 8.2
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = -2
Query: 298 IGFVGSAISIMTTSASHQPSREH 230
+G+ G A+ +++ QP R H
Sbjct: 90 VGYKGRALVVVSCVTKDQPYRPH 112
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,990
Number of Sequences: 438
Number of extensions: 3470
Number of successful extensions: 23
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -