Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1179
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ...    84   7e-17
At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ...    83   2e-16
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa...    33   0.13 
At1g04380.1 68414.m00428 2-oxoglutarate-dependent dioxygenase, p...    31   0.67 
At2g03200.1 68415.m00273 aspartyl protease family protein contai...    29   1.5  
At4g11655.1 68417.m01863 transmembrane protein, putative contain...    29   2.0  
At5g04320.1 68418.m00424 expressed protein                             29   2.7  
At4g28610.1 68417.m04091 myb family transcription factor, putati...    27   6.2  
At4g24805.1 68417.m03553 expressed protein                             27   6.2  
At4g13920.1 68417.m02154 disease resistance family protein / LRR...    27   6.2  
At3g14830.1 68416.m01873 expressed protein                             27   6.2  
At1g50610.1 68414.m05685 leucine-rich repeat transmembrane prote...    27   8.3  

>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
           Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
           sapiens]
          Length = 1703

 Score = 83.8 bits (198), Expect = 7e-17
 Identities = 41/73 (56%), Positives = 51/73 (69%)
 Frame = +3

Query: 225 YLCSREGW*DAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKTLQIF 404
           Y+C RE      VVIIDM  P  P+RRPI+ADSA+MNP SK++ALK +     Q  LQIF
Sbjct: 38  YICVRETSPQNSVVIIDMNMPMQPLRRPITADSALMNPNSKILALKAQVPGTTQDHLQIF 97

Query: 405 NIEMKSKMKAHTM 443
           NIE K+K+K+H M
Sbjct: 98  NIEAKAKLKSHQM 110



 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 41/140 (29%), Positives = 56/140 (40%), Gaps = 1/140 (0%)
 Frame = +1

Query: 130 PIRFQEHLQLTNVGINPASISFNTLTMESDKFICVREKVGETXXXXXXXXXXXXXXXXXX 309
           PI  +E L L ++GIN   I+F  +TMESDK+ICVRE   +                   
Sbjct: 7   PITMKEVLTLPSIGINQQFITFTNVTMESDKYICVRETSPQNSVVIIDMNMPMQPLRRPI 66

Query: 310 XXXTLLS*IQXXXXXXXXXXXXXXXXXHFKSSTSR*NPK*RRTP*PEDIGFWKWISLNTL 489
              + L                     H +        K +    PE + FWKWI+   L
Sbjct: 67  TADSALM-NPNSKILALKAQVPGTTQDHLQIFNIEAKAKLKSHQMPEQVVFWKWITPKML 125

Query: 490 ALVTK-MWCPLAMEGDSTPV 546
            LVT+      ++EGDS PV
Sbjct: 126 GLVTQNSVYHWSIEGDSEPV 145


>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
           Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
           sapiens]
          Length = 1705

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 40/73 (54%), Positives = 51/73 (69%)
 Frame = +3

Query: 225 YLCSREGW*DAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKTLQIF 404
           Y+C RE      VVIIDM  P  P+RRPI+ADSA+MNP S+++ALK +     Q  LQIF
Sbjct: 38  YICVRETAPQNSVVIIDMNMPMQPLRRPITADSALMNPNSRILALKAQVPGTTQDHLQIF 97

Query: 405 NIEMKSKMKAHTM 443
           NIE K+K+K+H M
Sbjct: 98  NIEAKAKLKSHQM 110



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 41/140 (29%), Positives = 55/140 (39%), Gaps = 1/140 (0%)
 Frame = +1

Query: 130 PIRFQEHLQLTNVGINPASISFNTLTMESDKFICVREKVGETXXXXXXXXXXXXXXXXXX 309
           PI  +E L L +VGI    I+F  +TMESDK+ICVRE   +                   
Sbjct: 7   PIIMKEVLTLPSVGIGQQFITFTNVTMESDKYICVRETAPQNSVVIIDMNMPMQPLRRPI 66

Query: 310 XXXTLLS*IQXXXXXXXXXXXXXXXXXHFKSSTSR*NPK*RRTP*PEDIGFWKWISLNTL 489
              + L                     H +        K +    PE + FWKWI+   L
Sbjct: 67  TADSALM-NPNSRILALKAQVPGTTQDHLQIFNIEAKAKLKSHQMPEQVAFWKWITPKML 125

Query: 490 ALVTKMWC-PLAMEGDSTPV 546
            LVT+      ++EGDS PV
Sbjct: 126 GLVTQTSVYHWSIEGDSEPV 145


>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 666

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +2

Query: 296 NSTTNQCRLCYHESS**SHCFERQSWC*SSKNTSNLQHRDEIQNEGAHHDPKTLVSGSGF 475
           N+TT   R  Y  SS  SH  +  +W    +++S L   D + + G+  D + L  G GF
Sbjct: 44  NNTTGSGRPTYASSS--SHVVQNHNWWSFGESSSRLGPSDHLNSNGSKTDRQLLSDGYGF 101


>At1g04380.1 68414.m00428 2-oxoglutarate-dependent dioxygenase,
           putative Strong similarity to Arabidopsis 2A6
           (gb|X83096), tomato ethylene synthesis regulatory
           protein E8 (SP|P10967)
          Length = 345

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 204 HHGIGQVYLCSREGW*DAEVVIIDMADPTNPIRRPISADSAIMNPASKVIALKG 365
           +H   ++Y  S   W D+ V  +D  DP+NP   P++   A++  +  V++L G
Sbjct: 118 YHNNFELYSSSAGNWRDSFVCYMD-PDPSNPEDLPVACRDAMIGYSKHVMSLGG 170


>At2g03200.1 68415.m00273 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 461

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 99  GVINKHGASITDTVSRTFTAYQCGNQSCFYFFQ 197
           G++NK GAS+   V++T +  +  +Q  FY+ +
Sbjct: 276 GIVNKTGASLDGEVTKTMSLLRNPDQPSFYYLE 308


>At4g11655.1 68417.m01863 transmembrane protein, putative contains 4
           transmembrane spanning domains, PMID:11152613
          Length = 208

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -1

Query: 353 NDFTSWIHDSRVC---TDWSSNWICWICHINNDNFCVSPTFSRTQINLSDSMVRVLKEIE 183
           +D+ S+I D  +C      SS  I WI HIN D        S   +++S S   VL    
Sbjct: 136 SDYISFIFDQVICYLLVSSSSVAIAWIQHINEDAIKTLRNNSIVSVSMSFSAFLVL--TL 193

Query: 182 AGLIPTLVSCK 150
           +GL+     CK
Sbjct: 194 SGLLSGYKLCK 204


>At5g04320.1 68418.m00424 expressed protein
          Length = 419

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = -1

Query: 230 QINLSDSMVRVLKEIEAGLIPTL---VSCKCS*NRIGNTCAMFIDHSVLHKPKTKKRATL 60
           ++   +++++V K +E  ++P        K S +     C  F  H + HK   +KR T 
Sbjct: 62  ELGCKNALLKVKKHLEEQVLPRTHHESKDKVSASASDGDCKSFQVHDIKHKDTKRKRTTR 121

Query: 59  LKS 51
           +KS
Sbjct: 122 IKS 124


>At4g28610.1 68417.m04091 myb family transcription factor, putative
           / phosphate starvation response regulator, putative
           (PHR1) contains Pfam profile: PF00249 myb-like
           DNA-binding domain; identical to cDNA phosphate
           starvation response regulator 1 (phr1 gene) GI:15384675
          Length = 409

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 470 HFQKPMSSGHGVRLHFGFHLDVEDLKCFLSFNTSFAFQ--SNDFTSWIHDS 324
           H     SSG    LH+   +  E  + +   +++ A Q  SN+ ++W HDS
Sbjct: 64  HICSSSSSGFATNLHYSTMVSHEKQQHYTGSSSNNAVQTPSNNDSAWCHDS 114


>At4g24805.1 68417.m03553 expressed protein
          Length = 247

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +3

Query: 261 VVIIDMADPTNPIRRPISADSAIMNPASKVIALK--GKAGVEAQKTLQIFNIEMKSKMKA 434
           ++I   A PT  +RRP+S+ S++ + A + I ++  G +  EA    Q+ N     K++ 
Sbjct: 21  LIIFLFAFPTTFLRRPLSSSSSVTSVADEGIRIRHHGYSSYEAYIKHQL-NKTQNPKLR- 78

Query: 435 HTMTRRHW 458
              T R W
Sbjct: 79  KVWTTRDW 86


>At4g13920.1 68417.m02154 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 891

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 140 FKNIYSLPMWESILLLFLSTLSPWNRTS 223
           FKN +S+P  +S L+L L T + W   +
Sbjct: 37  FKNEFSIPSPDSDLMLILQTTAKWRNNT 64


>At3g14830.1 68416.m01873 expressed protein
          Length = 476

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
 Frame = +3

Query: 105 INKHGASITDTVSRTFTAYQCGNQSCFYFFQHSHHGIGQVYLCSREGW*DAEVVIIDMAD 284
           + +HG  + D +++ FT     N   F  +  +HH + +  L   E       VI    D
Sbjct: 13  VQRHGQDLADRLAQGFTGLIHINPPSFP-WPPNHHHLHKAKLFDLEFPTQHFSVI---KD 68

Query: 285 PTNPIRRPISADSAIMNPASKVIALKGKAGVEAQKTLQIFNIEMKSKMKAHTM--TRRHW 458
               I +PI+  +AI++  +K+    G+AGV+    L +   +   ++    +       
Sbjct: 69  SRFSINQPINGVTAILDIGNKI----GQAGVDFGAGLNVMVQQFFRRLPIPFLHEDNNKL 124

Query: 459 FLEVDFTEHTRSGHQDVVSTGD 524
            + VD  + TRS    V++ GD
Sbjct: 125 VVSVDGDKSTRSHRAYVITKGD 146


>At1g50610.1 68414.m05685 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor-like protein kinase
           GB:AAC12254 GI:3015488 from [Lycopersicon esculentum]
          Length = 686

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 401 DLKCFLSFNTSFAFQSNDFTSWIHDSRVCTDWSSNWICWIC 279
           D  C L F  + A   ++F SW   S  C   ++NW   +C
Sbjct: 47  DADCLLRFKDTLA-NGSEFRSWDPLSSPCQGNTANWFGVLC 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,995,981
Number of Sequences: 28952
Number of extensions: 245221
Number of successful extensions: 686
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)