Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1175
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0266 + 16240162-16242075                                         27   5.5  
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658...    27   5.5  
03_02_0323 - 7450996-7451229,7451320-7451469,7451571-7451718,745...    27   5.5  
01_06_0899 + 32837027-32837215,32837366-32837547,32839056-328391...    27   7.2  
11_04_0217 + 14979455-14979781                                         26   9.5  
02_02_0340 + 9135846-9138377                                           26   9.5  

>09_04_0266 + 16240162-16242075
          Length = 637

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +2

Query: 128 HYIPGYTGHCPEYKYRIGDTYGSQHTRSFSIRACSIQR 241
           HYI       PE +  IGD Y  Q T  F + A   QR
Sbjct: 475 HYIAHKIKDSPELRGLIGDEYLKQLTGKFRLAATRYQR 512


>05_02_0099 -
           6582498-6582725,6583148-6583235,6583437-6583830,
           6585855-6585990,6586413-6586931
          Length = 454

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 86  KFTMALDLVSIAQPHYIPGYTGHCPEYKYRI 178
           +F M ++L+S  +  Y+ G  GHC E  +R+
Sbjct: 169 EFEMEVELLSRLRSPYLLGLIGHCSEGGHRL 199


>03_02_0323 -
           7450996-7451229,7451320-7451469,7451571-7451718,
           7451816-7451895,7451990-7452150,7452417-7452665,
           7452747-7453211,7453306-7453421,7453529-7453647,
           7453749-7453834,7453970-7454120
          Length = 652

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 278 LEVIGRSIDSTSLSECCTLGSRRILCVASHTYRRSDTC 165
           ++ +G+ +   +L+E    G R    VA H YR+SD C
Sbjct: 19  MDGVGKELLQWALNEAARSGDR---VVAVHIYRKSDNC 53


>01_06_0899 +
           32837027-32837215,32837366-32837547,32839056-32839102,
           32839426-32839500,32839595-32839726,32839800-32839972,
           32840005-32840277,32840386-32840519,32840640-32840726,
           32840834-32840948
          Length = 468

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 176 IGDTYGSQHTRSFSIRACSIQRGW 247
           I D+ GS+    F +  C I  GW
Sbjct: 42  ISDSNGSEDAEEFMLSTCKISEGW 65


>11_04_0217 + 14979455-14979781
          Length = 108

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -2

Query: 218 SRRILCVASHTYRRSDTCTRDND 150
           SRRILCV+S  Y RS   T D+D
Sbjct: 49  SRRILCVSSERY-RSLKATLDDD 70


>02_02_0340 + 9135846-9138377
          Length = 843

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 193 LATHKILLDPSVQHSERLVLSIERPMTSRSTVQHR 297
           L +H   L    Q  ER VLS++RP TS +  Q++
Sbjct: 184 LCSHVSNLLKITQPEERRVLSLKRPPTSSTITQNK 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,170,532
Number of Sequences: 37544
Number of extensions: 233710
Number of successful extensions: 484
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)