Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1175
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)             45   2e-05
SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.086
SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)               33   0.11 
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13)                   28   2.4  
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_34652| Best HMM Match : Ank (HMM E-Value=3.8e-34)                   28   3.2  
SB_14700| Best HMM Match : MbeB_N (HMM E-Value=1.8)                    27   7.4  
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)
          Length = 332

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 14/23 (60%), Positives = 22/23 (95%)
 Frame = +2

Query: 125 PHYIPGYTGHCPEYKYRIGDTYG 193
           P++IPGY G+CP++KY+IG+T+G
Sbjct: 47  PYHIPGYCGYCPQFKYQIGETFG 69



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 134 IPGYTGHCPEYKYRIGDTYG 193
           +P +TGH P  K+R G T+G
Sbjct: 301 VPHFTGHVPGEKFRYGMTFG 320



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 134 IPGYTGHCPEYKYRIGDTY 190
           +PGYTG+ P+ ++  G++Y
Sbjct: 124 VPGYTGYIPKAEHYYGNSY 142


>SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 33.1 bits (72), Expect = 0.086
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 131 YIPGYTGHCPEYKYRIGDTYGSQHTRSF 214
           ++PGY G  P+ ++R GDT+G+   + F
Sbjct: 19  HLPGYAGFRPQQQWRYGDTFGNDTAKYF 46


>SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)
          Length = 834

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 140 GYTGHCPEYKYRIGDTYG 193
           GY G+CP+ KY  G TYG
Sbjct: 634 GYRGYCPQLKYECGHTYG 651


>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 226 RSDREGSCVLRAIRIADPILVLGTMTRVPRNIMRLGD 116
           R+D       +A++I  PI+V+  +T +P NI R  D
Sbjct: 686 RNDHFNEKNFKALKILTPIVVVFALTMLPYNIYRFAD 722


>SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13)
          Length = 274

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 121 PTALYSWVHGSLSRVQVS 174
           P A Y W HG+LSR++ S
Sbjct: 103 PLAHYPWFHGTLSRIEAS 120


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 257  IDSTSLSECCTLGSRRILCVASHTYRRSDTCTRDNDPCTQE 135
            ID     +CC+ G RR+   A      S    +D +P  QE
Sbjct: 1703 IDCAGTQKCCSNGCRRLCADAERATTTSTRGEKDAEPAFQE 1743


>SB_34652| Best HMM Match : Ank (HMM E-Value=3.8e-34)
          Length = 1330

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = -2

Query: 335 PLRKRASTMX--ILVLCWTVDLEVIGRSIDS-TSLSECCTLGSRRILCVASHTYRRSDTC 165
           PL K A T    IL L  T    +  R+ D+ T L    + GS+   CV       +DT 
Sbjct: 392 PLHKAAQTNNHSILHLLITKGANINARNNDNVTPLMMAASRGSKD--CVRMLMENGADTT 449

Query: 164 TRDNDPCTQEYNAVG 120
            +D D  T  +NAVG
Sbjct: 450 VKDVDGRTAVFNAVG 464


>SB_14700| Best HMM Match : MbeB_N (HMM E-Value=1.8)
          Length = 815

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 158 PEYKYRIGDTYGSQHTRSFSIR 223
           P Y    GD YG +H R++SI+
Sbjct: 592 PAYSGEGGDAYGGEHERAWSIQ 613



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 158 PEYKYRIGDTYGSQHTRSFSIR 223
           P Y    GD YG +H R++SI+
Sbjct: 568 PAYSGEGGDAYGREHERAWSIQ 589


>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +2

Query: 98   ALDLVSIAQPHYIPGYTGHCPEYKYRIGDTYGSQHTRSFSIRACSIQRGWCY 253
            A +L+ I + HY+P   G     +  +  TY   H   F +R   +  G  Y
Sbjct: 1198 ASELIQIWEVHYVPSAGGPLVRVEIPLVQTYFGFHGTVFKVRPGILTPGETY 1249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,027,605
Number of Sequences: 59808
Number of extensions: 272538
Number of successful extensions: 652
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)