Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1175
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20861-12|AAA62299.1|  403|Caenorhabditis elegans Hypothetical p...    28   2.8  
Z92786-9|CAB07204.2|  687|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z75539-2|CAA99844.2|  555|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U32326-1|AAC46965.1|  555|Caenorhabditis elegans G protein signa...    26   8.7  

>U20861-12|AAA62299.1|  403|Caenorhabditis elegans Hypothetical
           protein C28H8.11a protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 189 MARNTQDPSRSERAAFREAGAIDRTADDFQ-IYRPAQNEDXHR 314
           +A+   DPS +E  A +      +TAD FQ I  P Q+E   R
Sbjct: 235 LAKQAADPSNTEEIAKQLTAEYHKTADAFQSILDPRQHEQHIR 277


>Z92786-9|CAB07204.2|  687|Caenorhabditis elegans Hypothetical
           protein F47H4.2 protein.
          Length = 687

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 7   IIDIFDFLNSKLCFNYITIRPKIFFFEIYNGS 102
           I  I  F   KLCF  ITIR  ++  EI+  S
Sbjct: 572 IESIGHFHKVKLCFRQITIRDLLYLKEIFMNS 603


>Z75539-2|CAA99844.2|  555|Caenorhabditis elegans Hypothetical
           protein F28C1.2 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 156 VPSTSIGSAIRMARNTQDPSRS 221
           +PSTS GSA    +N Q+PS S
Sbjct: 256 LPSTSNGSATSPRKNDQEPSTS 277


>U32326-1|AAC46965.1|  555|Caenorhabditis elegans G protein
           signaling regulator protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 156 VPSTSIGSAIRMARNTQDPSRS 221
           +PSTS GSA    +N Q+PS S
Sbjct: 256 LPSTSNGSATSPRKNDQEPSTS 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,529,650
Number of Sequences: 27780
Number of extensions: 199623
Number of successful extensions: 462
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)