Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1175
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   0.97 
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   0.97 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   3.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.9  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    20   9.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   9.1  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 80  FLKFTMALDLVSIAQPHYIPGYTGHCPEYKY 172
           ++K    L + S A+   +PG    CP YKY
Sbjct: 294 YVKIVYYLGIPSEARELQLPGCEVLCPLYKY 324


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 0.97
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 80  FLKFTMALDLVSIAQPHYIPGYTGHCPEYKY 172
           ++K    L + S A+   +PG    CP YKY
Sbjct: 309 YVKIVYYLGIPSEARELQLPGCEVLCPLYKY 339


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 269 IGRSIDSTSLSECCTLGSRRILCVASHTY 183
           +G  ++  S+ EC    S  ILCV   TY
Sbjct: 128 VGIDLEMPSV-ECIVFNSGTILCVPFTTY 155


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 133 YSWVHGSLSRVQVSDRRYVW 192
           + W   S+ R++  D  YVW
Sbjct: 129 HPWFKKSVQRIKPYDEYYVW 148


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 314 TMXILVLCWTVDLEVI 267
           T  +  LCWT D +VI
Sbjct: 152 TERLEALCWTQDEDVI 167


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 51  LHNYSAKNIFF*NLQWLWI*SVSPNRI 131
           LHN    ++   NL WL++ +  P+ I
Sbjct: 24  LHNNMCTSLNLSNLFWLFVGTYFPSLI 50


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 314 TMXILVLCWTVDLEVI 267
           T  +  LCWT D ++I
Sbjct: 205 TERLEALCWTQDEDII 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,725
Number of Sequences: 438
Number of extensions: 2371
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)