Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1175
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03310.2 68414.m00310 isoamylase, putative / starch debranchi...    31   0.37 
At1g03310.1 68414.m00309 isoamylase, putative / starch debranchi...    31   0.37 
At4g31820.1 68417.m04522 phototropic-responsive NPH3 family prot...    26   8.0  
At2g42720.1 68415.m05291 F-box family protein contains F-box dom...    26   8.0  

>At1g03310.2 68414.m00310 isoamylase, putative / starch debranching
           enzyme, putative similar to isoamylase isoform 2
           [Solanum tuberosum] GI:27728147, isoamylase from
           [Triticum aestivum] GI:17932898, [Hordeum vulgare]
           GI:21314275, [Oryza sativa] GI:3252794; contains Pfam
           profiles PF00128: Alpha amylase catalytic domain,
           PF02922: Isoamylase N-terminal domain; ESTs gb|H36690,
           gb|AA712462, gb|AA651230 and gb|N95932 come from this
           gene
          Length = 882

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 94  NGSGFSQYRPTALYSWVHGSLSRVQVSDRRYVWLATHKILLDPSVQHSER 243
           N  GF+Q+R + L S V G+ S V         L T+ +LL+P    SE+
Sbjct: 370 NVKGFTQHRSSKLPSNVAGTFSGVAEKVSHLKTLGTNAVLLEPIFSFSEQ 419


>At1g03310.1 68414.m00309 isoamylase, putative / starch debranching
           enzyme, putative similar to isoamylase isoform 2
           [Solanum tuberosum] GI:27728147, isoamylase from
           [Triticum aestivum] GI:17932898, [Hordeum vulgare]
           GI:21314275, [Oryza sativa] GI:3252794; contains Pfam
           profiles PF00128: Alpha amylase catalytic domain,
           PF02922: Isoamylase N-terminal domain; ESTs gb|H36690,
           gb|AA712462, gb|AA651230 and gb|N95932 come from this
           gene
          Length = 882

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 94  NGSGFSQYRPTALYSWVHGSLSRVQVSDRRYVWLATHKILLDPSVQHSER 243
           N  GF+Q+R + L S V G+ S V         L T+ +LL+P    SE+
Sbjct: 370 NVKGFTQHRSSKLPSNVAGTFSGVAEKVSHLKTLGTNAVLLEPIFSFSEQ 419


>At4g31820.1 68417.m04522 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 571

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 299 VLCWTVDLEVIGRSIDSTS 243
           +L W+ DL+++GR IDS S
Sbjct: 150 LLPWSEDLKLVGRCIDSVS 168


>At2g42720.1 68415.m05291 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 443

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 10  IDIFDFLNSKLCFNYITIRP-KIFFFEIYNGSGFSQYRPTALYSWVHGSLSRVQVSD 177
           ID  DF+N+   FN     P K    +I+     S    T + SW+H  LSR  V+D
Sbjct: 59  IDFVDFVNT--LFNRKGNSPIKKLALKIHLKDNQSLQNQTHVQSWIHRVLSRGGVTD 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,014,356
Number of Sequences: 28952
Number of extensions: 185350
Number of successful extensions: 421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)