Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1174
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    27   1.0  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    27   1.8  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    24   9.4  
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch...    24   9.4  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    24   9.4  

>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 224 CTVSNVSQENRIKVFPXKVTRFFREIXTSTMDYRLKNNVE 343
           CT+  ++ +  I   P K+  F R I ++T+D  LK+ V+
Sbjct: 198 CTILYIAHDEFIAKHPDKIKAFLRAIHSATLD-MLKDPVQ 236


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = -1

Query: 383 LYKHPSVAESYPVFLRCSSIYNP*CWSRSL*RNELLXVEILLFYFLG*RWKLCSQYHFKS 204
           L K P++A  Y    R     N   + + L +NE L  +  ++  L     LC +  F+ 
Sbjct: 294 LSKFPNLASVYIPLTRALKSGNLGEFGKCLQKNETLLAKTKIYLTLEGTRDLCIRNLFRK 353

Query: 203 LWPTCAK 183
            W  C K
Sbjct: 354 TWIICGK 360


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 325 SIIHSA-GXDLSKETSYFXWKYFYSIFLANVGNCAANIILNL 203
           SI+H+  G  L   T++F  +YF    +   G C   I +NL
Sbjct: 192 SILHTLYGQSLKHNTNFFI-EYFAMDLIMEGGECRGVIAMNL 232


>SPAC1556.03 |azr1||serine/threonine protein phosphatase
           Azr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 247 LANVGNCAANIILNLCGQLVLN 182
           L+NV  C  ++ + +C Q VLN
Sbjct: 236 LSNVQKCLDDLAMRICRQAVLN 257


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 271 WKYFYSIFLANVGNCAANI-ILNLCGQLVL 185
           WKYFY      +GN   ++  LNL  +L+L
Sbjct: 304 WKYFYQYPAPPIGNDIFDLPTLNLYAELLL 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,452,142
Number of Sequences: 5004
Number of extensions: 24881
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)