Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1174
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0137 + 18343106-18344686                                         29   2.3  
06_01_0208 - 1581686-1581715,1581891-1582091,1582628-1582966,158...    28   3.0  
11_03_0146 + 10744403-10744603,10745199-10745834,10745967-107461...    27   7.0  
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784           27   7.0  
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528...    27   7.0  
01_06_1653 + 38922265-38923086                                         27   9.2  
01_01_0894 + 7047273-7048277,7049124-7049549                           27   9.2  

>05_04_0137 + 18343106-18344686
          Length = 526

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 54  EDVDVDDLMRXYTNDVIAXAGFGLQVNSLVDKDNEFYEXGQAMFS 188
           E VD+ D +R +  D I    FG++ ++L++   E     +A+F+
Sbjct: 175 EAVDLQDALRRFAFDSICHVAFGVESSTLLETAREDSGRHEALFA 219


>06_01_0208 -
           1581686-1581715,1581891-1582091,1582628-1582966,
           1583274-1583558,1583769-1583984,1584395-1584739
          Length = 471

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 60  VDVDDLMRXYTNDVIAXAGFGLQVNSLVDKDNEFYEXGQA 179
           +++ DL+   T D I   GFG ++N+L   D    +  +A
Sbjct: 184 INIQDLLMRATMDSIFKVGFGFELNTLSGSDESGIQFSKA 223


>11_03_0146 +
           10744403-10744603,10745199-10745834,10745967-10746125,
           10746398-10747036,10748018-10748151,10748281-10748464,
           10748882-10749217,10751659-10751945,10752863-10753253,
           10753351-10753615,10753740-10753818,10754123-10754543
          Length = 1243

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 296 EIXTSTMDYRLKNNVERPDMIQLLMDAYKGTLKXESNESDEK 421
           EI    + Y+   ++E+PD+IQ LMD         S + D K
Sbjct: 101 EIGLDAVAYKSLESLEQPDLIQWLMDRTDPDTMCISIDDDRK 142


>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
          Length = 394

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 352 IRSFYVVLQSIIHSAGXDLSKETSYFXWKYFYSIFLANVGNCAANIILNLCGQ 194
           IR F++++  ++     D  KET     + F SI  AN+   A  I L+L G+
Sbjct: 259 IRDFFILVDFVVLDINSD--KETPLILGRPFLSIVEANIDVGAGEIRLDLNGK 309


>02_05_0540 +
           29852109-29852195,29852304-29852477,29852585-29852841,
           29852954-29853125,29853513-29853551,29853647-29853715,
           29853795-29853911,29854190-29854401,29854578-29854736,
           29854810-29855009,29855100-29855266,29855346-29855442,
           29855560-29855651,29855861-29856139
          Length = 706

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/74 (24%), Positives = 32/74 (43%)
 Frame = +2

Query: 155 RILRVXSSNV*HKLATEI*NDIGCTVSNVSQENRIKVFPXKVTRFFREIXTSTMDYRLKN 334
           R+L     N  H L       IGCTV N+  ++ ++  P  +     +I    +   L N
Sbjct: 193 RVLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLILGLISQIIKIQLLADL-N 251

Query: 335 NVERPDMIQLLMDA 376
             + P +++L  D+
Sbjct: 252 LKKTPQLVELFDDS 265


>01_06_1653 + 38922265-38923086
          Length = 273

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 348 GLSTLFFNL*SIVLVXISLKKRVTXCGNTFILFSWLT-LETVQPIS 214
           GL  L F    I    +   +RVT  G + ++F W+T L T QP S
Sbjct: 106 GLLVLGFYHVMIQKFKVEYFRRVTAVGYSCVVFGWMTILATKQPSS 151


>01_01_0894 + 7047273-7048277,7049124-7049549
          Length = 476

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 54  EDVDVDDLMRXYTNDVIAXAGFG 122
           E V++ DL+  Y N VI+ A FG
Sbjct: 185 ETVNLSDLLMSYANGVISRAAFG 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,787,957
Number of Sequences: 37544
Number of extensions: 139240
Number of successful extensions: 344
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)