Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1174
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1738| Best HMM Match : p450 (HMM E-Value=0)                         36   0.015
SB_59709| Best HMM Match : p450 (HMM E-Value=8e-16)                    36   0.015
SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)                  33   0.082
SB_34556| Best HMM Match : p450 (HMM E-Value=0)                        30   0.77 
SB_2899| Best HMM Match : Spectrin (HMM E-Value=0.2)                   29   1.8  
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              29   1.8  
SB_13025| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_51039| Best HMM Match : OAR (HMM E-Value=0.92)                      27   5.4  
SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)                 27   7.2  
SB_35141| Best HMM Match : p450 (HMM E-Value=0)                        27   7.2  
SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)                     27   7.2  
SB_104| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.2  
SB_51175| Best HMM Match : p450 (HMM E-Value=0)                        27   9.5  
SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_5471| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  

>SB_1738| Best HMM Match : p450 (HMM E-Value=0)
          Length = 484

 Score = 35.9 bits (79), Expect = 0.015
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 54  EDVDVDDLMRXYTNDVIAXAGFGLQVNSLVDKDNEFYEXGQAMFSTS-WPQRFKMILAAQ 230
           E  D  +L   +  DVI  + FG++ +   D D+ FY+  +  F T  W + F M   ++
Sbjct: 162 ESTDCVNLFSLFALDVITISAFGVETDIQTDPDSSFYKLAKKAFRTPIWVRAFSMFPFSE 221

Query: 231 F 233
           +
Sbjct: 222 Y 222


>SB_59709| Best HMM Match : p450 (HMM E-Value=8e-16)
          Length = 377

 Score = 35.9 bits (79), Expect = 0.015
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 54  EDVDVDDLMRXYTNDVIAXAGFGLQVNSLVDKDNEFYEXGQAMFSTS-WPQRFKMILAAQ 230
           E  D  +L   +  DVI  + FG++ +   D D+ FY+  +  F T  W + F M   ++
Sbjct: 66  ESTDCVNLFSLFALDVITISAFGVETDIQTDPDSSFYKLAKKAFRTPIWVRAFSMFPFSE 125

Query: 231 F 233
           +
Sbjct: 126 Y 126


>SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)
          Length = 492

 Score = 33.5 bits (73), Expect = 0.082
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 12  FSKFIVEYLKGHQLEDVDVDDLMRXYTNDVIAXAGFGLQVNSLVDKDNEFY-EXGQAMFS 188
           FS+ + E   G     +D++D ++    D++    FG+++NS+ D +  FY    ++  +
Sbjct: 173 FSQSLSEITDGKTA--IDMEDFVKRMALDIMGKVAFGIKINSIEDPNTPFYTALEESRSA 230

Query: 189 TSW 197
           T W
Sbjct: 231 THW 233


>SB_34556| Best HMM Match : p450 (HMM E-Value=0)
          Length = 408

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 54  EDVDVDDLMRXYTNDVIAXAGFGLQVNSLVDKDNEFYEXGQAMFS-TSWPQRFKMILAAQ 230
           E VD   L   +  +VI  A FG   +     D EF    + +F+  +W + F MI  A 
Sbjct: 89  ESVDCIRLFSLFALEVIMSAAFGYHADVQTAPDEEFVAKARNVFAIPAWRRFFSMIPFAD 148

Query: 231 F 233
           F
Sbjct: 149 F 149


>SB_2899| Best HMM Match : Spectrin (HMM E-Value=0.2)
          Length = 139

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +2

Query: 227 TVSNVSQENRIKVFPXKVTRFFREIXTSTMDYRLKNNVERPDMIQLL----MDAYKGTLK 394
           TV+++ ++  ++     V  F   +  S +D RLKN  +  DM+       MD YKG  +
Sbjct: 12  TVTSLERQKELESTWSAVKHFTEAV--SVLDRRLKNKFDEIDMLMKAGADSMDVYKGLKR 69

Query: 395 XESN 406
            ES+
Sbjct: 70  LESD 73


>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2509

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +2

Query: 227  TVSNVSQENRIKVFPXKVTRFFREIXTSTMDYRLKNNVERPDMIQLL----MDAYKGTLK 394
            TV+++ ++  ++     V  F   +  S +D RLKN  +  DM+       MD YKG  +
Sbjct: 2331 TVTSLERQKELESTWSAVKHFTEAV--SVLDRRLKNKFDEIDMLMKAGADSMDVYKGLKR 2388

Query: 395  XESN 406
             ES+
Sbjct: 2389 LESD 2392


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +2

Query: 227 TVSNVSQENRIKVFPXKVTRFFREIXTSTMDYRLKNNVERPDMIQLL----MDAYKGTLK 394
           TV+++ ++  ++     V  F   +  S +D RLKN  +  DM+       MD YKG  +
Sbjct: 39  TVTSLERQKELESTWSAVKHFTEAV--SVLDRRLKNKFDEIDMLMKAGADSMDVYKGLKR 96

Query: 395 XESN 406
            ES+
Sbjct: 97  LESD 100


>SB_13025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 57  DVDVDDLMRXYTNDVIAXAGFGLQVNSLVDKDNEF 161
           +V + D     T DVI   GF + VNS+ D+++ F
Sbjct: 31  EVRMADEFAKVTLDVIGKVGFNIDVNSIGDENSPF 65


>SB_51039| Best HMM Match : OAR (HMM E-Value=0.92)
          Length = 545

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
 Frame = +2

Query: 176 SNV*HKLATEI*NDIGCTVSNVSQENRIKVFPXKVTRFFREIXTSTMDYRL-KNNVERPD 352
           SN    LA++I   +     + S E R      K   F   I  S     L K +VE   
Sbjct: 164 SNTLKALASDISEGLKHVKRSGSNEKRAAYKALKSLAFGDNIKKSRAKKSLGKKHVETKI 223

Query: 353 MIQLLMDAYKGTLKXESNESDEKNVGFAMTE 445
           +    M   KG +K   NES E  +   +TE
Sbjct: 224 LFDACMKFRKGVVKTTGNESKESPIFKTLTE 254


>SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)
          Length = 1736

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 236 WKLCSQYHFKSLWPTCAKHCLTXLVEFVILVDQRI 132
           W+  S     S+ P C  H L  L  F +L+D R+
Sbjct: 463 WRRLSDVLGLSMVPVCGYHPLQLLDSFCVLLDDRV 497


>SB_35141| Best HMM Match : p450 (HMM E-Value=0)
          Length = 565

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 20/79 (25%), Positives = 34/79 (43%)
 Frame = +3

Query: 18  KFIVEYLKGHQLEDVDVDDLMRXYTNDVIAXAGFGLQVNSLVDKDNEFYEXGQAMFSTSW 197
           K I+ Y      E VD+  +    T +VI    FG+      + +N F +  + +F +  
Sbjct: 232 KSILYYESESNGESVDILGMFCQMTLEVILSTAFGIDSEVQKNPNNTFSDKAKEIFKS-- 289

Query: 198 PQRFKMILAAQFPTLAKKI 254
           P   +M L   F ++  KI
Sbjct: 290 PTFLRMFLMLPFASVFFKI 308


>SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)
          Length = 714

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 358 NHIRSFYVVLQSIIHSAGXDLSKETSYFXWKYFYSIFLANVGNCAANIILNLCGQL 191
           N +R+F   +++I+H+ G +LS+E      K   +   + +  C   +IL L  +L
Sbjct: 116 NELRTFKADMKAILHNYGAELSEERIKECMKALKTKKFSKLEFCLRQLILALVERL 171


>SB_104| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 336 LFFNL*SIVLVXISLKKRVTXCGNTFILFSWLTLETVQPIS 214
           L  NL  +V+V +  KK+   CG+T +  +   L TVQ +S
Sbjct: 13  LILNL--VVIVIVISKKQSRRCGSTLLCKALEELSTVQAVS 51


>SB_51175| Best HMM Match : p450 (HMM E-Value=0)
          Length = 408

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +3

Query: 18  KFIVEYLKGHQLEDVDVDDLMRXY---TNDVIAXAGFGLQVNSLVDKDNEFYEXGQAMFS 188
           + +VE L G   +D    D+ R Y   T + I    FG+   +  + +++F    Q  F 
Sbjct: 68  RILVEQL-GQACKDGKSVDVCRTYVKFTMETIVSTAFGIDCQTQTNPNDQFLSNAQRYFG 126

Query: 189 TSWPQRFKMILAAQFPTL 242
              P  F  ILA  FP L
Sbjct: 127 K--PSPF-TILAVLFPYL 141


>SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1452

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +2

Query: 281  TRFFREIXTSTMDYRL--KNNVERPDMIQLLMDAYKGTLKXESNESDEKNVGFAMTE 445
            T F +      +D R   + NVE   +    M   KG +K   NES+E      +TE
Sbjct: 892  TNFVKAAGFGCVDERFIERENVETKILFDACMKFRKGVVKTTGNESEESPTFKTLTE 948


>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3610

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 299  IXTSTMDYRLKNNVERPDMIQLLMDAYKGTLKXESNESDEKNVGFAMT 442
            + +S +DY   NN E  D  +  +D  +GT++       E+   +++T
Sbjct: 1693 VTSSKLDYESVNNYELQDYQKFTIDTQRGTIRNAVVFDREEESRYSLT 1740


>SB_5471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = +3

Query: 18  KFIVEYLKGHQLEDVDVDDLMRXY---TNDVIAXAGFGLQVNSLVDKDNEFYEXGQAMFS 188
           + +VE L G   +D    D++R Y   T + I    FG+   +  + +++F    Q +F 
Sbjct: 193 RILVEKL-GEACKDGKSVDVLRSYGKFTMETIVTTAFGIDCQTQTNPNDQFVPNAQRLFG 251

Query: 189 TSWPQRFKMILAAQFPTL 242
                 F+M LA  FP L
Sbjct: 252 GQ--SLFRM-LAVLFPYL 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,396,598
Number of Sequences: 59808
Number of extensions: 176049
Number of successful extensions: 403
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)