Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1172
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    27   1.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   3.4  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   7.8  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   7.8  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 257  FEVT-LSPFPSDAPLTSMDVERALSXAPRRGXAVFKSSG 370
            FEV  LS FPSD   T   +ER+     R G AVF+S+G
Sbjct: 1371 FEVNGLSHFPSDIEDT---IERSHPRIARGGTAVFQSAG 1406


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 422 SGQSPTFPNIRTTTANSLQSS*RPRXXDAEXSSTRALRPYSSEE 291
           S Q     N +T   NS +++       AE SST  + PY S +
Sbjct: 156 SSQQKFHGNDKTLEKNSAKATINKSNSTAETSSTATVEPYDSND 199


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 13  SSGTSSIPKFHSSLQDLKQPSLQEPR 90
           S  T+S  K H S   LK+ S  EPR
Sbjct: 255 SDETNSFSKLHQSQFGLKEESSHEPR 280


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 326 STRALRPYSSEERRSGTETA*LQTPSQFSFGYGG 225
           S  A      +E  S   ++  QTPS+FS  YGG
Sbjct: 40  SAGAAPAVGDDESVSSRGSSRSQTPSEFSSNYGG 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,653,887
Number of Sequences: 5004
Number of extensions: 24893
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)