Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1172
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    31   0.57 
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of c...    27   9.3  
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    27   9.3  
AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrat...    27   9.3  

>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 21/86 (24%), Positives = 40/86 (46%)
 Frame = -3

Query: 327 LNARSTSILVRGASLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCR 148
           +++ +++I +  +S  +  S T+ A + L  + ++T   T A NG   S  G+  +TTC+
Sbjct: 175 VSSTTSNISLTSSSTQSYSSSTAGATSSLFTI-KVTQSTTAAGNGQGGSGSGSA-TTTCK 232

Query: 147 TARRAYSKARMACDTGGKASWLLKAW 70
            +    S    A     K+  L   W
Sbjct: 233 CSAGDVSATTAASACSEKSGCLKNQW 258


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -3

Query: 213 LTTASNGSDSSSRGTEYSTT--CRTARRAYSKARMACDTGGKAS 88
           ++  S G  SSSRG+ Y  T   R+++R+ S++R    +G ++S
Sbjct: 104 VSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSS 147


>Z82282-2|CAB05274.2|  544|Caenorhabditis elegans Hypothetical
           protein T07G12.2 protein.
          Length = 544

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 257 FEVTLSPFPSDAPLTSMDVERALSXAPRRGXAVFKSSGGCSLSWFGCWEMSAT 415
           F V L  F    P  SM+ ++A   A  +  + F    G  ++WF CW ++ T
Sbjct: 188 FVVLLEEFEVPMPAFSME-KKAFYTAKMKIFSQFPYLLGIMIAWFVCWILTIT 239


>U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of clr
           protein 1 protein.
          Length = 430

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 245 TAMAFEVTLSPFPSDAPLTSMDVERALSXAPRRGXA 352
           + +A   T SP PSD    S+DV+R L+    R  A
Sbjct: 391 STLAATSTRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
            ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 227  RHTQMRTAMAFEVTLSPFPSDAPLTSMDVERALSXAPR 340
            RHT + +A A   + +P P+ AP     V RA S  P+
Sbjct: 1086 RHTPVGSAQAGSASSTPTPAAAPTNWGAVARAASVDPK 1123


>AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrate
           adaptor proteinSOC-1 protein.
          Length = 430

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 245 TAMAFEVTLSPFPSDAPLTSMDVERALSXAPRRGXA 352
           + +A   T SP PSD    S+DV+R L+    R  A
Sbjct: 391 STLAATSTRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,247,640
Number of Sequences: 27780
Number of extensions: 144460
Number of successful extensions: 463
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)