Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1172
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26130.1 68418.m03108 pathogenesis-related protein, putative ...    33   0.13 
At4g10350.1 68417.m01700 no apical meristem (NAM) family protein...    29   1.2  
At2g32140.1 68415.m03928 disease resistance protein (TIR class),...    29   2.1  
At5g04960.1 68418.m00525 pectinesterase family protein contains ...    28   2.8  
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ...    28   2.8  
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila...    28   2.8  
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC...    28   3.7  
At3g10710.1 68416.m01289 pectinesterase family protein contains ...    27   6.5  
At5g19560.1 68418.m02329 hypothetical protein contains Pfam prof...    27   8.7  
At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67, ...    27   8.7  

>At5g26130.1 68418.m03108 pathogenesis-related protein, putative
           similar to PR-1a protein [Nicotiana tabacum] GI:19944;
           contains Pfam profile PF00188: SCP-like extracellular
           protein
          Length = 164

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 24/85 (28%), Positives = 36/85 (42%)
 Frame = -3

Query: 351 AXPRRGAKLNARSTSILVRGASLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRG 172
           A  R+G      S S  + G +L       S A AV +WV   +D++  ++  SD    G
Sbjct: 62  AQQRKGDCSLTHSNSNGLYGENLAWSGGALSGAEAVKLWVNEKSDYIYASNTCSDGKQCG 121

Query: 171 TEYSTTCRTARRAYSKARMACDTGG 97
                  RT+      A++ CD GG
Sbjct: 122 HYTQVVWRTSEWV-GCAKVKCDNGG 145


>At4g10350.1 68417.m01700 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           nap gene, Arabidopsis thaliana, gb:AJ222713
          Length = 341

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 294 GASLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEY 163
           G  +G  ++V S+     +  W + D L T   G++ SSRG  Y
Sbjct: 265 GLDVGTCETVASHNHQQGLGEWAMMDRLVTCHMGNEDSSRGITY 308


>At2g32140.1 68415.m03928 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 2/107 (1%)
 Frame = -3

Query: 402 SQHPNHDSEQPP--ELLKTAXPRRGAKLNARSTSILVRGASLGNGDSVTSNAIAVLIWVW 229
           SQ PN D E      LLK       AKL A +TSI+   A L    S    A   ++   
Sbjct: 260 SQKPNFDDEDDDGDSLLKALV----AKLVASTTSIVAAYAELQRAHSDAIQAAETVVVDV 315

Query: 228 RLTDHLTTASNGSDSSSRGTEYSTTCRTARRAYSKARMACDTGGKAS 88
           +    L  +SNG    S     S+     RR+  + ++  +  G +S
Sbjct: 316 KTLSELIRSSNGGGGGSGSGSGSSLENQPRRSKVRKQVWAEVLGISS 362


>At5g04960.1 68418.m00525 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 564

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 333 AKLNARSTSILVRGAS-LGNGDSVTSNAIAVLIWVWRLTD 217
           A + A   S+   G + L N   +TSNA+A++ W+ ++ D
Sbjct: 177 ALVEANKPSLTTFGENHLKNSTEMTSNALAIITWLGKIAD 216


>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
           WD-40 repeats (PF0400);  similar to WD-40 repeat protein
           MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 496

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 234 VWRLTDHLTTASNGSDSSSRGTEYSTT 154
           +W + DH+T A  GSDS S G+ +  T
Sbjct: 235 LWNIQDHITMA--GSDSKSPGSSFKQT 259


>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
           to pre-mRNA splicing factor pre-mRNA splicing factor
           prp1 (SP:Q12381) [Fission yeast]
          Length = 1029

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 313 RARVELXSASXXRGLQELWRLFAVVVRMLGNV 408
           RAR+ L  A    G + +W   A+V R LGNV
Sbjct: 745 RARMLLAKARERGGTERVWMKSAIVERELGNV 776


>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
           Drosophila melanogaster, EMBL:AF186472
          Length = 566

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 28  SIPKFHSSLQDLKQPSLQEPRCLATRV 108
           ++ K  SS +DL    L+ PRCLA+ V
Sbjct: 21  NVSKGKSSSEDLTNVKLESPRCLASNV 47


>At3g10710.1 68416.m01289 pectinesterase family protein contains
           similarity to pectinesterase GB:AAB57671 [Citrus
           sinensis]; contains Pfam profile: PF01095 pectinesterase
          Length = 561

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 285 LGNGDSVTSNAIAVLIWVWRLTD 217
           L N   +TSNA+A++ W+ ++ D
Sbjct: 198 LKNSTELTSNALAIITWLGKIAD 220


>At5g19560.1 68418.m02329 hypothetical protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 493

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 10  KSSGTSSIPKFHSSLQDLKQPSLQEPRCLATRVTGHARL 126
           K S  S I  FH   Q+ ++P ++ PR L  + +  A+L
Sbjct: 445 KHSSMSDIEFFHKVEQEKEKPMMKSPRALPKKFSYLAKL 483


>At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67,
           putative nearly identical to 67kD chloroplastic
           RNA-binding protein, P67 [Arabidopsis thaliana]
           GI:9755842
          Length = 688

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +1

Query: 298 DEYGRRARVELXSASXXRGLQELWRL----FAVVVRMLGNVGDW 417
           D YGR   V++  +   R   E WR+    F+ ++R+ G  G++
Sbjct: 239 DAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNY 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,949,892
Number of Sequences: 28952
Number of extensions: 141635
Number of successful extensions: 433
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)