Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1169
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 90 2e-19
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 87 2e-18
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 27 1.6
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 1.6
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 3.7
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 6.5
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.5
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 90.2 bits (214), Expect = 2e-19
Identities = 47/131 (35%), Positives = 76/131 (58%)
Frame = +1
Query: 22 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 201
+ I ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61
Query: 202 KKELAAVRTVCSHVENMIKE*LKASNTRCVLCMLTSPLTVSPLRVIQLLRYRNFLGEKYI 381
+K A +RT S + NMI + + L P+ ++ ++ RNFLGE+
Sbjct: 62 RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 382 RRVKMAPGVTV 414
R +K PGVTV
Sbjct: 122 RVIKCLPGVTV 132
Score = 80.2 bits (189), Expect = 2e-16
Identities = 48/102 (47%), Positives = 58/102 (56%)
Frame = +3
Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSXXXXXXXXXXXXHQKGKDGTWCDCR*LSKQKD 437
GVT+GF+YKMR VYAHFPIN TE + + K S KD
Sbjct: 81 GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140
Query: 438 ELIIEGNSLEDVSSSAALIQQSTTSRIRISRKVLDGLYGSEK 563
E+IIEGNSLE+VS SAA I+Q R + RK LDG+Y SE+
Sbjct: 141 EIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSER 182
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 86.6 bits (205), Expect = 2e-18
Identities = 46/131 (35%), Positives = 74/131 (56%)
Frame = +1
Query: 22 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 201
+ I ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61
Query: 202 KKELAAVRTVCSHVENMIKE*LKASNTRCVLCMLTSPLTVSPLRVIQLLRYRNFLGEKYI 381
+K A +R+V S + NMI + + L P+ ++ ++ RNFLGE+
Sbjct: 62 RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 382 RRVKMAPGVTV 414
R +K PGVTV
Sbjct: 122 RVIKCLPGVTV 132
Score = 79.4 bits (187), Expect = 4e-16
Identities = 47/102 (46%), Positives = 58/102 (56%)
Frame = +3
Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSXXXXXXXXXXXXHQKGKDGTWCDCR*LSKQKD 437
GVT+GF+YKMR VYAHFPIN TE + + K S KD
Sbjct: 81 GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140
Query: 438 ELIIEGNSLEDVSSSAALIQQSTTSRIRISRKVLDGLYGSEK 563
E+I+EGNSLE+VS SAA I+Q R + RK LDG+Y SE+
Sbjct: 141 EIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSER 182
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 459 SLEDVSSSAALIQQSTTSRIRISRKVLDGLYGS 557
S EDV + ++L +S++ I I +V+ G YGS
Sbjct: 824 SQEDVPNFSSLYSESSSQTIPIMSQVVSGKYGS 856
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +1
Query: 49 KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 216
K+PDG+ + SRL K P L F H +VD+ + L + E WF
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622
Query: 217 AVRTVCSHVENMI 255
+ T+CS + N++
Sbjct: 1623 VLATICSCLGNLL 1635
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -2
Query: 231 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNCHQT 85
D P+G GS F+ V+H+N N+ ++ +N N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 225 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGP 103
PH GK S +N E+R A+V+S + PF GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 215 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 105
A SFL+P STF R F+ +S C + LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,144
Number of Sequences: 5004
Number of extensions: 48727
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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