Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1169
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    117   6e-27
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   110   1e-24
11_05_0092 + 18984571-18984621,18984717-18984779,18984957-189849...    31   0.54 
12_02_0154 + 14494319-14495857                                         28   6.7  
03_06_0712 - 35683814-35684065,35685296-35685466                       27   8.9  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  117 bits (282), Expect = 6e-27
 Identities = 57/137 (41%), Positives = 89/137 (64%), Gaps = 1/137 (0%)
 Frame = +1

Query: 19  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWF 195
           MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 196 GSKKELAAVRTVCSHVENMIKE*LKASNTRCVLCMLTSPLTVSPLRVIQLLRYRNFLGEK 375
           G+++ +AA+RT  SHV+N+I    K    +        P+  S       +  RNFLGEK
Sbjct: 61  GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120

Query: 376 YIRRVKMAPGVTVVNSQ 426
            +R+V M  GVT++ S+
Sbjct: 121 KVRKVDMLEGVTILRSE 137



 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 45/108 (41%), Positives = 58/108 (53%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSXXXXXXXXXXXXHQKGKDGTWCDCR*LSKQKD 437
           GVTKG++YKMR VYAHFPIN   T  N+             +K             K KD
Sbjct: 82  GVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKD 141

Query: 438 ELIIEGNSLEDVSSSAALIQQSTTSRIRISRKVLDGLYGSEKTLVVLD 581
           EL+++GN +E VS SAALI Q    + +  RK LDG+Y S+K  +  D
Sbjct: 142 ELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 189


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  110 bits (264), Expect = 1e-24
 Identities = 54/130 (41%), Positives = 82/130 (63%), Gaps = 3/130 (2%)
 Frame = +1

Query: 46  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV---NPRLLKVEKWFGSKKELA 216
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 217 AVRTVCSHVENMIKE*LKASNTRCVLCMLTSPLTVSPLRVIQLLRYRNFLGEKYIRRVKM 396
           A+RT  SHV+N+I    K    +        P+  S       +  RNFLGEK +R+V M
Sbjct: 61  AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 120

Query: 397 APGVTVVNSQ 426
             GVT++ S+
Sbjct: 121 LEGVTILRSE 130



 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 45/108 (41%), Positives = 58/108 (53%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSXXXXXXXXXXXXHQKGKDGTWCDCR*LSKQKD 437
           GVTKG++YKMR VYAHFPIN   T  N+             +K             K KD
Sbjct: 75  GVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKD 134

Query: 438 ELIIEGNSLEDVSSSAALIQQSTTSRIRISRKVLDGLYGSEKTLVVLD 581
           EL+++GN +E VS SAALI Q    + +  RK LDG+Y S+K  +  D
Sbjct: 135 ELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 182


>11_05_0092 +
           18984571-18984621,18984717-18984779,18984957-18984998,
           18985560-18985625,18985728-18985793,18986277-18986390,
           18986592-18986655,18987399-18987481,18987703-18987752,
           18987844-18987921,18988020-18988148,18988244-18988286,
           18988987-18989073,18989217-18989318,18989556-18989663,
           18989750-18989800,18989886-18989959,18990079-18990130,
           18990216-18990311
          Length = 472

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 386 LLMYFSPKKLRYLNN*ITLSGDTVNGEVSIHSTHLVLEAFSYSFIMFS 243
           +L +  PK L  +   +T+  D   G VS H+ HLV  A S  ++ F+
Sbjct: 249 MLGFDDPKMLELMRLYVTIHTDHEGGNVSAHTGHLVGSALSDPYLSFA 296


>12_02_0154 + 14494319-14495857
          Length = 512

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = +1

Query: 106 PRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKE*LKA 273
           P+ VL+   KH+  D+   +  L ++E+ F +K+ L     V  H +NM++E LK+
Sbjct: 250 PKPVLRP--KHVIGDVGNSDDPLHELEQSFFNKRFLIVFEDVDIHKKNMLEELLKS 303


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 115 VLKRNF-KHLAVDIRMVNPRLLKVE 186
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,013,003
Number of Sequences: 37544
Number of extensions: 318994
Number of successful extensions: 709
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)