Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1169
(613 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos... 105 3e-23
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim... 104 5e-23
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil... 104 5e-23
At3g60100.1 68416.m06711 citrate synthase, mitochondrial, putati... 31 0.46
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)... 28 4.2
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 27 9.8
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas... 27 9.8
>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
ribosomal protein L9, cytosolic - garden pea,
PIR2:S19978
Length = 194
Score = 105 bits (251), Expect = 3e-23
Identities = 53/141 (37%), Positives = 86/141 (60%), Gaps = 5/141 (3%)
Frame = +1
Query: 19 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 183
MK I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++ R LK+
Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60
Query: 184 EKWFGSKKELAAVRTVCSHVENMIKE*LKASNTRCVLCMLTSPLTVSPLRVIQLLRYRNF 363
+ WFGS+K A++RT SHV+N+I + R P+ S + + RNF
Sbjct: 61 DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120
Query: 364 LGEKYIRRVKMAPGVTVVNSQ 426
LGEK +R+V+M GV +V S+
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSE 141
Score = 72.9 bits (171), Expect = 2e-13
Identities = 43/109 (39%), Positives = 57/109 (52%)
Frame = +3
Query: 258 GVTKGFQYKMRAVYAHFPINCVTTEGNSXXXXXXXXXXXXHQKGKDGTWCDCR*LSKQKD 437
GVT+GF Y+MR VYAHFPIN N +K + K KD
Sbjct: 86 GVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKD 145
Query: 438 ELIIEGNSLEDVSSSAALIQQSTTSRIRISRKVLDGLYGSEKTLVVLDD 584
E+I+EGN +E VS S ALI Q + + RK LDG+Y SEK + +++
Sbjct: 146 EIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194
>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
[Arabidopsis thaliana]
Length = 194
Score = 104 bits (249), Expect = 5e-23
Identities = 51/141 (36%), Positives = 87/141 (61%), Gaps = 5/141 (3%)
Frame = +1
Query: 19 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 183
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 184 EKWFGSKKELAAVRTVCSHVENMIKE*LKASNTRCVLCMLTSPLTVSPLRVIQLLRYRNF 363
+ WFG++K A++RT SHV+N+I + + P+ S + + RNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 364 LGEKYIRRVKMAPGVTVVNSQ 426
LGEK +R+V+M GVT+V S+
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSE 141
Score = 73.7 bits (173), Expect = 9e-14
Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Frame = +3
Query: 258 GVTKGFQYKMRAVYAHFPINC-VTTEGNSXXXXXXXXXXXXHQ-KGKDGTWCDCR*LSKQ 431
GVT+GF+YKMR VYAHFPIN + +G S + + DG K
Sbjct: 86 GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRS--EKV 143
Query: 432 KDELIIEGNSLEDVSSSAALIQQSTTSRIRISRKVLDGLYGSEKTLVVLDD 584
KDE++++GN +E VS S ALI Q + + RK LDG+Y SEK+ +V ++
Sbjct: 144 KDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194
>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
thaliana]
Length = 194
Score = 104 bits (249), Expect = 5e-23
Identities = 51/141 (36%), Positives = 87/141 (61%), Gaps = 5/141 (3%)
Frame = +1
Query: 19 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-----NPRLLKV 183
MK I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++ + LK+
Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 184 EKWFGSKKELAAVRTVCSHVENMIKE*LKASNTRCVLCMLTSPLTVSPLRVIQLLRYRNF 363
+ WFG++K A++RT SHV+N+I + + P+ S + + RNF
Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 364 LGEKYIRRVKMAPGVTVVNSQ 426
LGEK +R+V+M GVT+V S+
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSE 141
Score = 73.7 bits (173), Expect = 9e-14
Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Frame = +3
Query: 258 GVTKGFQYKMRAVYAHFPINC-VTTEGNSXXXXXXXXXXXXHQ-KGKDGTWCDCR*LSKQ 431
GVT+GF+YKMR VYAHFPIN + +G S + + DG K
Sbjct: 86 GVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRS--EKV 143
Query: 432 KDELIIEGNSLEDVSSSAALIQQSTTSRIRISRKVLDGLYGSEKTLVVLDD 584
KDE++++GN +E VS S ALI Q + + RK LDG+Y SEK+ +V ++
Sbjct: 144 KDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194
>At3g60100.1 68416.m06711 citrate synthase, mitochondrial, putative
strong similarity to SP|Q43175 Citrate synthase,
mitochondrial precursor {Solanum tuberosum}; contains
Pfam profile PF00285: Citrate synthase
Length = 433
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 401 GAIFTLLMYF-SPKKLRYLNN*ITLSGDTVNGEVSIHSTHLVLEAFSYSFIMFS 243
GA F+ ++ F SP+ + +T+ D G VS H+ HLV A S ++ F+
Sbjct: 205 GANFSHMLGFDSPQMKELMRLYVTIHSDHEGGNVSAHAGHLVGSALSDPYLSFA 258
>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 410
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = +1
Query: 40 QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 183
+++K+ DG VHV ++ + ++ +LK+N + +++ + P L V
Sbjct: 204 KELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPTLFNV 251
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 219 GGKLLFGSEPFLN-LQETRVYHANVNSQVFEVP 124
GGK L + FLN L+E ++HAN N+ V VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218
>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
B, chloroplast (GAPB) / NADP-dependent
glyceraldehydephosphate dehydrogenase subunit B
identical to SP|P25857 Glyceraldehyde 3-phosphate
dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
(NADP-dependent glyceraldehydephosphate dehydrogenase
subunit B) {Arabidopsis thaliana}
Length = 447
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 43 KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 153
+VKI D T+ V +L+ V R LK + L +DI
Sbjct: 138 EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDI 174
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,997,799
Number of Sequences: 28952
Number of extensions: 259444
Number of successful extensions: 654
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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