Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1167
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    30   0.17 
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    29   0.39 
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    28   0.90 
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   1.6  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    27   2.1  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   8.4  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   8.4  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -2

Query: 318  RNFLNLVTGFVVNASLTRIFYSSSRNLAIYFSVLAQF*IEKQILDGEVCVN 166
            R  LN V GFVV   LT +   S        +VLAQ  ++  ++ G++ VN
Sbjct: 898  RRLLNGVQGFVVPGKLTALMGESGAGKTTLLNVLAQR-VDTGVVTGDMLVN 947


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 168 NVGDNIIRACSAKRVYVKVMS 106
           N+GD+I+ AC  K +Y K++S
Sbjct: 131 NIGDDILSACIPKEIYEKMLS 151


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 269 HAFFTLRHVILRYISLFWPNSKLKSKYW 186
           H F T R V L + ++F+P + L+ K+W
Sbjct: 443 HDFSTPRDVKLSFKAMFFPIAALRQKFW 470


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +1

Query: 121 INSLCTTCSYNIVTDINAHFSV 186
           I++LCTTC+ +++T+I+   +V
Sbjct: 575 IHTLCTTCASHLLTEIDGFMAV 596


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -2

Query: 345 LKPDEIVFIRNFLNLVTGFVVNASLTRIFYSSSRNLAIYFSVLAQF*IEKQILDGE 178
           LKP+EI    NF+ L     +N S    FY  S++L+ Y  ++A       ILD +
Sbjct: 163 LKPEEI----NFVPLNQTQEINGSNLLEFYKDSKHLSRYLHIIANSPRYPVILDAK 214


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 333 EIVFIRNFLNLVTGFVVNASLTRIFYSSSRNLAIYFSVLAQF 208
           +++F  NFLN+V G +   SL      S+  +   F+ +  F
Sbjct: 483 KVLFSLNFLNIVQGGIFTFSLAIACLLSAYRVTFGFNTVGDF 524


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 251 RHVILRYISLFWPNSKLKSKY 189
           R V+ RY   FW +S L  KY
Sbjct: 315 REVLRRYSDFFWLHSYLMKKY 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,914,672
Number of Sequences: 5004
Number of extensions: 37229
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)