Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1167
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0553 - 22048530-22048532,22049733-22050848                       29   2.7  
04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200     29   2.7  
04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497     29   2.7  
07_01_0014 - 103808-103873,103925-104248                               27   6.3  
06_01_1074 - 8765183-8765278,8765657-8765749,8766520-8766600,876...    27   6.3  
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294...    27   6.3  
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816...    27   8.4  

>06_03_0553 - 22048530-22048532,22049733-22050848
          Length = 372

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 378 DAWLVFPLHTLLKPDEIVFIRNFLNLVTGFVVNASLTRIFYSSSRNLA 235
           + W       +   DE   +++FLN   G VV +S+ R +    RNL+
Sbjct: 29  EQWQTMHRDVVFIRDEFEMMQSFLNSADGEVVKSSMARTWVRQVRNLS 76


>04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200
          Length = 405

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 357 LHTLLKPDEIVFIRNFLNLVTGFVVNASLTRIFYSSSRNL 238
           L ++  PD +  I+N LNL+ G  V A L  +   S+ NL
Sbjct: 197 LQSIHSPDALEMIQNHLNLIMGEKVAAPLDTVVEISNLNL 236


>04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497
          Length = 405

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 357 LHTLLKPDEIVFIRNFLNLVTGFVVNASLTRIFYSSSRNL 238
           L ++  PD +  I+N LNL+ G  V A L  +   S+ NL
Sbjct: 197 LQSIHSPDALEMIQNHLNLIMGEKVAAPLDTVVEISNLNL 236


>07_01_0014 - 103808-103873,103925-104248
          Length = 129

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 316 EFFKFSNWICGQCLPHTHFLLF 251
           EFF FS   CG+C PHT   +F
Sbjct: 108 EFFVFS---CGRCRPHTKISIF 126


>06_01_1074 -
           8765183-8765278,8765657-8765749,8766520-8766600,
           8767092-8767173,8767261-8767313,8767391-8767456,
           8767534-8767697,8768028-8768295
          Length = 300

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 133 CTTCSYNIVTDINAHF 180
           CT  SYNI+ D NAH+
Sbjct: 92  CTIMSYNILADNNAHY 107


>03_05_0843 +
           28126480-28127007,28127092-28127457,28129388-28129487,
           28130266-28130546,28130643-28130705,28131276-28131431,
           28131913-28132080,28132158-28132298,28132714-28132840,
           28132888-28132994,28134142-28134372,28134446-28134559,
           28135091-28135261
          Length = 850

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 221 FWPNSKLKSKYWTEKCALMSVTIL 150
           FW +S LKSK+W     L  V +L
Sbjct: 517 FWADSNLKSKFWGRSIQLDPVGVL 540


>03_02_0404 -
           8165211-8165318,8165397-8165733,8166031-8166242,
           8166419-8166526,8166676-8166783,8166884-8166993,
           8167122-8167228,8167349-8167566,8167674-8167841,
           8168033-8168151,8168438-8168525,8168655-8168849,
           8168968-8169271,8169363-8169480,8170034-8170133,
           8170283-8170468
          Length = 861

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 233 YISLFWPNSKLKSKYWTE 180
           Y   F PNSK K K WTE
Sbjct: 244 YCDQFTPNSKSKPKMWTE 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,325,333
Number of Sequences: 37544
Number of extensions: 203725
Number of successful extensions: 386
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)