Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1167
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48880.2 68416.m05340 F-box family protein N7 protein - Medic...    28   3.0  
At3g48880.1 68416.m05339 F-box family protein N7 protein - Medic...    28   3.0  
At2g05300.1 68415.m00558 F-box family protein contains F-box dom...    28   4.0  
At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c...    27   7.0  
At1g58520.1 68414.m06653 early-responsive to dehydration protein...    27   7.0  
At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger) fa...    27   9.3  
At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger) fa...    27   9.3  

>At3g48880.2 68416.m05340 F-box family protein N7 protein - Medicago
           truncatula, EMBL:CAA76808 ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 309

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 251 EE*KMRVREALTTNPVTK-FKKFLIKTISSGLRSVCRG 361
           E  ++R  E L T+ + + F+KF +  ++SGL  VCRG
Sbjct: 6   ESRRLRRWEELDTDILVRIFQKFSVFELTSGLAHVCRG 43


>At3g48880.1 68416.m05339 F-box family protein N7 protein - Medicago
           truncatula, EMBL:CAA76808 ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 309

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 251 EE*KMRVREALTTNPVTK-FKKFLIKTISSGLRSVCRG 361
           E  ++R  E L T+ + + F+KF +  ++SGL  VCRG
Sbjct: 6   ESRRLRRWEELDTDILVRIFQKFSVFELTSGLAHVCRG 43


>At2g05300.1 68415.m00558 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 420

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 366 PTKHHSTSADIFKPLINFPR 425
           P K HST  D FK L+  PR
Sbjct: 391 PLKSHSTKDDFFKKLLEIPR 410


>At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein
           contains Pfam domain PF01902: Domain of unknown function
          Length = 715

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/42 (23%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = -2

Query: 204 IEKQILDGEVCV---NVGDNIIRACSAKRVYVKVMSSICLVL 88
           ++K+++DG+VCV   ++   ++R    +   ++++S  C+ L
Sbjct: 585 VQKRVVDGKVCVAVLSISAELMRKLQGEEEELEIVSRFCVYL 626


>At1g58520.1 68414.m06653 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 657

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 327 VFIRNFLN-LVTGFVVNASLTRIFYSSSRNLAIYFSVLAQF*IEKQILDGEVCVNV 163
           +  +NF+N ++TG++ +  L   FY+    L +YFS L +  I + I     C+ V
Sbjct: 307 ILSKNFINQVITGYLPSVILILFFYAVP-PLMMYFSAL-EGCISRSIRKKSACIKV 360


>At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|Q06003 Goliath
           protein (G1 protein) {Drosophila melanogaster}; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 381

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 112 YFYINSLCTTCSYNIVTDIN 171
           + YIN+ C  C YNI+   N
Sbjct: 355 WLYINATCPLCKYNILKSSN 374


>At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|Q9NVW2 RING finger
           protein 12 (LIM domain interacting RING finger protein)
           {Homo sapiens}; contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 368

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 112 YFYINSLCTTCSYNIVTDIN 171
           + YIN+ C  C YNI+   N
Sbjct: 343 WLYINATCPLCKYNILKSSN 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,622,255
Number of Sequences: 28952
Number of extensions: 181601
Number of successful extensions: 410
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)