Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1166
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy... 65 7e-12
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch... 56 3e-09
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 31 0.14
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 30 0.24
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 27 1.3
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 3.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 6.8
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 25 6.8
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 6.8
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom... 25 9.0
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin... 25 9.0
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2... 25 9.0
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 25 9.0
>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 162
Score = 64.9 bits (151), Expect = 7e-12
Identities = 38/92 (41%), Positives = 52/92 (56%)
Frame = +2
Query: 239 SNKNNITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRH 418
S K I SP++ GPY+QAI A+ +Y SG + + + +++ G QTRQ L NL+
Sbjct: 37 STKTPINSPKL-SSAGPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQE 94
Query: 419 VLEAGGASLESAVKTTGLVASMDDXQTFNKVY 514
VL G+SL VK +A MDD NKVY
Sbjct: 95 VLTEAGSSLNKIVKVNIFLADMDDFAAVNKVY 126
>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 126
Score = 56.0 bits (129), Expect = 3e-09
Identities = 28/77 (36%), Positives = 42/77 (54%)
Frame = +2
Query: 284 GPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESAVKT 463
GPY+QA+ + ++ SG + +D V G + QTR ++NL VL G+SLE VK
Sbjct: 15 GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73
Query: 464 TGLVASMDDXQTFNKVY 514
+ +DD N+VY
Sbjct: 74 NIFLTDIDDFAAMNEVY 90
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 30.7 bits (66), Expect = 0.14
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +2
Query: 281 VGPYSQAILADKTLYISGILGL 346
+GPYSQ+I A+ ++ISG +GL
Sbjct: 421 IGPYSQSICANGVVFISGQIGL 442
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 29.9 bits (64), Expect = 0.24
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 368 CGGAEAQTRQALDNLRHVLEAGGASLESAVK 460
C G + T++ +D LR ++AGG E A+K
Sbjct: 88 CRGNQLMTQEEIDELRANIKAGGLRAEEAIK 118
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -1
Query: 473 PNQ*FSRPTPTKRHQLQVHVADCPEPDGSALQHHRRPSVHLDPIREFQK 327
PN + RP PT ++LQ H+ D PD A + L QK
Sbjct: 37 PNSEYFRPGPTMLNRLQEHLHDTILPDVLAASYRHDIDTALSTDEHTQK 85
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 433 WRFVGVGRENYWFGG*HGRLXNFQQS 510
W F+ V +NYW +GR F S
Sbjct: 2187 WFFISVFLQNYWMSSVYGRSWAFMWS 2212
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 332 QKCIRSCPLKLLDCTDLLVDIFPEML-YCFCYFIVIRIF 219
+K +RSC K+L T L D+F + Y F +R F
Sbjct: 1223 EKLVRSCLSKILGNTVLSADVFENLQNYGFDSLCAMRFF 1261
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 365 PSVHLDPIREFQKCIRSCPLKLLDCTDLLVDIF 267
P L P+ FQ +R+CPL + LL +IF
Sbjct: 135 PGYSLRPV--FQVRLRACPLGSVQFNPLLAEIF 165
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 280 SRSVQSSNF--SGQDLIHFWNSRIGSRC 357
S+ +Q F SGQD++ FW +R+ C
Sbjct: 504 SKDIQPLPFIESGQDILFFWIARMALLC 531
>SPBC19C2.02 |pmt1||DNA methyltransferase
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 384 ASAPPQTICASRSNPRIPEMYKVLSAKIA 298
A+ P +CA NP+ E+Y + K+A
Sbjct: 26 ANIPADIVCAIDINPQANEIYNLNHGKLA 54
>SPBPB21E7.04c ||SPAPB21E7.04c,
SPAPB21E7.04c|S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 281
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 191 VFGRQCRIF*AHFYSLDVNRSIVQMTKR 108
+FG+Q AH+YSL+VN ++ +
Sbjct: 111 LFGKQLTDPSAHYYSLEVNPKFAKIASK 138
>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 338
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 149 SLDVNRSIVQMTKR*HYRCSDSKSMEYLHKCYFIIIIP 36
SLDV ++++ T RC++ + Y K + I IP
Sbjct: 56 SLDVQKNMITQTSLYVLRCNNISTFPYATKIHVINPIP 93
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 24.6 bits (51), Expect = 9.0
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Frame = +2
Query: 59 IYVGIPYSYYLNTDSVIFLSFELLTYLHL---KNKNELRRF---CTG------VRRQSFA 202
I +G PYS ++T SV +EL T L + N++ R+ C G ++R F
Sbjct: 331 IILGFPYSCPIDTWSVGCSLYELYTGQILFPGRTNNQMLRYMMECKGKFSHKMLKRSQFL 390
Query: 203 QNEFSKKFE*Q*SNKNNITSPEIYQPV 283
+ F F + + IT+ E +PV
Sbjct: 391 NDHFDADFNFIQIDHDPITNQETRKPV 417
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,426
Number of Sequences: 5004
Number of extensions: 42812
Number of successful extensions: 129
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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