Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1166
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102... 54 9e-08
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 46 1e-05
12_01_0112 - 860330-861946 30 0.97
03_06_0110 - 31727376-31727381,31727554-31727664,31728071-317281... 30 0.97
07_02_0027 - 11963040-11963294 29 1.7
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9... 29 2.2
01_01_1073 + 8456426-8456677,8457039-8457152,8457546-8457710 29 2.2
10_01_0059 + 806112-806405 29 3.0
07_01_0829 - 6703293-6703547 29 3.0
07_01_0548 - 4061829-4062956 29 3.0
04_03_0445 - 16010516-16010770 29 3.0
02_03_0023 + 14031335-14031589 29 3.0
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701... 29 3.0
01_01_1074 + 8460072-8460326 29 3.0
11_01_0756 - 6352810-6353064 28 3.9
05_05_0167 - 22868506-22868580,22868693-22869103 28 3.9
12_01_0355 - 2704909-2705745 28 5.2
07_01_0726 - 5543633-5543887 28 5.2
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311... 28 5.2
03_01_0306 + 2391831-2391858,2392831-2392902,2393511-2393698,239... 28 5.2
12_01_0946 + 9376037-9376318 27 6.8
02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355 27 6.8
09_04_0263 + 16225591-16225830 27 9.0
>07_03_0593 +
19808148-19808310,19809416-19809531,19810129-19810202,
19810286-19810335,19810498-19810592
Length = 165
Score = 53.6 bits (123), Expect = 9e-08
Identities = 29/79 (36%), Positives = 47/79 (59%)
Frame = +2
Query: 281 VGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESAVK 460
+GPYSQAI A+ +++SG+LGL+ + + N+ +L+A GAS S VK
Sbjct: 69 LGPYSQAIKANNMVFVSGVLGLN--------------PEVMKNMGEILKASGASYSSVVK 114
Query: 461 TTGLVASMDDXQTFNKVYA 517
TT ++A + D + N++YA
Sbjct: 115 TTIMLADLQDFKKVNEIYA 133
>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 46.4 bits (105), Expect = 1e-05
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 281 VGPYSQAILADKTLYISGILGLDRDAQMVC-GGAEAQTRQALDNLRHVLEAGGASLESA 454
+GPYSQA L + LY++G LGLD +C GG A+ AL N V A G S+ S+
Sbjct: 870 IGPYSQATLHGEILYMAGQLGLDPPTMKLCPGGPTAELEFALRNSEAVANAFGCSIFSS 928
>12_01_0112 - 860330-861946
Length = 538
Score = 30.3 bits (65), Expect = 0.97
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 344 LDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESAVKTTGLVAS 481
++RD+ GGA ++R+A + L+ GG ++++ KT VA+
Sbjct: 284 VERDSAASSGGANGRSRRASLSGAGALQGGGGAMQTVAKTVDEVAA 329
>03_06_0110 -
31727376-31727381,31727554-31727664,31728071-31728133,
31729202-31729331,31729532-31729701,31729800-31729859,
31729941-31730018,31730108-31730197,31730275-31731118,
31731220-31731281,31731362-31731423,31731511-31731700
Length = 621
Score = 30.3 bits (65), Expect = 0.97
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 453 ADSNEAPPASSTCRRLSRA*RVCASAPPQTICASRSNPR 337
A + APP S C ++ + C P + +C S SNP+
Sbjct: 221 AKAQAAPPLSEVCSKMRKLNLACREVPSRYLCQS-SNPK 258
>07_02_0027 - 11963040-11963294
Length = 84
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q +V+ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQAYVSQDTPPDIDFRDRHGYSPTVSPDTVRRYESTI 53
>05_01_0002 -
8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
9802-9902,10016-10651,10820-10899,11014-11673,
11787-12041,12154-12281,12515-12669,12735-12919,
13020-13049,13164-13239,13371-13504,13703-13994,
14400-14567,14647-14745,14843-15014,15103-15281
Length = 1352
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 268 NISTSRSVQSSNFSGQDLIHFWNSRIGSRCTDGLRWC*SADPSG 399
NIST RSV+SS+ S + H SR G+ C SA P+G
Sbjct: 816 NISTERSVESSHLSRPEQNH---SRANMEVKPGINAC-SATPAG 855
>01_01_1073 + 8456426-8456677,8457039-8457152,8457546-8457710
Length = 176
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 12 TPTRSHNIQAYIRQDTPPDIDLKDRHGYSPTVSPDTVRRYESAI 55
>10_01_0059 + 806112-806405
Length = 97
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQAYIRQDTPPDIDFRDRHGYSPTVSPDTVRRYESAI 53
>07_01_0829 - 6703293-6703547
Length = 84
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQAYIRQDTPPDIDFRDRHGYSPTVSPDTVRRYESAI 53
>07_01_0548 - 4061829-4062956
Length = 375
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 408 LSRA*RVCASAPPQTICASRSNPRIPEMYKVLSA 307
LS A ++C++ PP + +NPR+ Y L A
Sbjct: 21 LSAAAQLCSACPPAASQTAENNPRLQRAYVALQA 54
>04_03_0445 - 16010516-16010770
Length = 84
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQANIRQDTPPDIDFTDRHGYSPTVSPDTVRRYESAI 53
>02_03_0023 + 14031335-14031589
Length = 84
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQAYIRQDTPPDIDFRDRHGYSPTVSPDTVRRYESAI 53
>01_06_0734 +
31569017-31569358,31569832-31569906,31570009-31570159,
31570716-31570784,31570864-31571036,31571474-31571611,
31571747-31571872,31571951-31572049,31573175-31573298,
31573465-31573528,31573798-31573852,31573951-31574075,
31574228-31574301,31574436-31574485,31574722-31574808,
31574897-31574947,31575025-31575108,31575400-31575498
Length = 661
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 507 LLKVXKSSMLATKPVVFTADSNEAPPASSTCRRLSRA*RVCASAPP 370
LL+ +S+ T PV T+ S+ AP S RRL A A+A P
Sbjct: 6 LLRGLRSAASRTSPVFPTSASSPAPYVSPLLRRLYSAAAASAAASP 51
>01_01_1074 + 8460072-8460326
Length = 84
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQAYIRQDTPPDIDFKDRHGYSPTVSPDTVRRYESAI 53
>11_01_0756 - 6352810-6353064
Length = 84
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTRSHNIQANIRQDTPPDIDFRDRHGYSPTVSPDTVRRYESAI 53
>05_05_0167 - 22868506-22868580,22868693-22869103
Length = 161
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 476 PPNQ*FSRPTPTKRHQLQVHVADCPEPDG 390
PP + + P T+ L VH D P+PDG
Sbjct: 37 PPVEWYGVPDGTRSLALVVHDVDAPDPDG 65
>12_01_0355 - 2704909-2705745
Length = 278
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -1
Query: 452 PTPTKRHQLQVHVADCPEPDGSALQHHRRPSVHLDPIREFQKCIRSCPLKLLDCTD 285
P P R + VAD DGS+L RP R C++S LL CT+
Sbjct: 72 PPPPVRAASWIDVADDKSKDGSSLDALLRPKSSAVK-RSASFCLKSSESSLLLCTE 126
>07_01_0726 - 5543633-5543887
Length = 84
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT H +Q ++ PD H P+V D +R ++ I
Sbjct: 10 TPTSSHNIQAYIRQDTPPDIDFRDRHGYSPTVSPDTVRRYESAI 53
>04_03_0181 -
12327281-12328620,12330922-12331015,12331079-12331183,
12331404-12332592,12333268-12333461
Length = 973
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -3
Query: 510 TLLKVXKSSMLATKPVVFTADSNEAPPASSTCRRLSRA*RVCASAPPQTICASRSNPR 337
TL +V KS T APPAS++ + ++R +S P T+ S+ +PR
Sbjct: 178 TLARV-KSERATTAAAASPRPPALAPPASNSLKDMARTAPSASSKAPSTLQKSKLSPR 234
>03_01_0306 +
2391831-2391858,2392831-2392902,2393511-2393698,
2394143-2394203,2394306-2394368,2394396-2394474,
2394557-2394689,2394727-2394934,2398088-2398143,
2398252-2400030,2400128-2400281,2400467-2401125
Length = 1159
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 344 LDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESA 454
LD+ Q V G E + +Q +++++H LE+G + + A
Sbjct: 28 LDKSLQGVQTGNEQRCQQEIEDIKHGLESGSITYDPA 64
>12_01_0946 + 9376037-9376318
Length = 93
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q ++ PD H P+V D +R ++ I
Sbjct: 28 TPTRSHNIQANIRQDTPPDIDFRDRHGYSPTVSPDIVRRYESAI 71
>02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355
Length = 392
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 492 KSSMLATKPVVFTADSNEAPPASSTCRRLSRA*RVCASAPPQTICASRS 346
+ S+ +KP T + PPA+ CR + V A+AP C RS
Sbjct: 16 RRSLHLSKPSCATFSARALPPAAHCCRTV-----VAAAAPSSRTCRCRS 59
>09_04_0263 + 16225591-16225830
Length = 79
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 449 TPTKRHQLQVHVADCPEPDGSALQHH-RRPSVHLDPIREFQKCI 321
TPT+ H +Q ++ PD H P+V D ++ ++ I
Sbjct: 10 TPTRSHNIQAYIRQDTPPDIDFRDRHGYSPTVSPDTVKRYKSAI 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,318,125
Number of Sequences: 37544
Number of extensions: 285191
Number of successful extensions: 696
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -