Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1166
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51650| Best HMM Match : GETHR (HMM E-Value=2.1e-06)                 30   1.3  
SB_45405| Best HMM Match : Calpain_III (HMM E-Value=6.1e-07)           29   3.0  
SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)                     28   4.0  
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)                 28   5.3  
SB_53893| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)         27   9.3  
SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)                      27   9.3  

>SB_51650| Best HMM Match : GETHR (HMM E-Value=2.1e-06)
          Length = 569

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -2

Query: 481 ASHQTSSFHGRLQRSATSFKYMSQIVQSLTGLRFSTTADHLCISIQSENSRNV*GLVR 308
           A + T+  HG   R+ T+     Q  ++ T L  S TA +    +QSE +RN   LV+
Sbjct: 294 ARNYTALVHGETARNYTAL-VQGQTARNFTALVQSETARNYTALVQSETARNYTALVQ 350


>SB_45405| Best HMM Match : Calpain_III (HMM E-Value=6.1e-07)
          Length = 363

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 243 LLYCYSNFLLNSF--WAKLCLRTPVQNLLS 160
           LL  +S +  NSF  W+ LC  +P+ +LLS
Sbjct: 90  LLIIHSYYTFNSFVAWSSLCTLSPISDLLS 119


>SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)
          Length = 474

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -1

Query: 437 RHQLQVHVADCPEPDGSALQHHRRPSVHLDPIREFQKCIRSCPLKLLDCTDLLV 276
           +H+L VH+  C   DGSA +  RR   H +  R     +R   ++LLD T +L+
Sbjct: 281 KHRLMVHLWRCAVRDGSA-EAIRRFFQHFEQFR----MLRMWKMQLLDETTILI 329


>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
          Length = 621

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +2

Query: 326 ISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESAVKTTGLVASMDDXQT 499
           I+GIL L   A +  GGA+   +  L+N+ ++L      L  A+    +    ++ Q+
Sbjct: 252 IAGILQLGNVAFLAAGGAQVADKNVLENVANLLNIDFYDLGDALTMKSMTLRGEEIQS 309


>SB_53893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 764

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 312 TRPYTFLEFSDWIEMHRWS 368
           TRP    EF  WI  H WS
Sbjct: 273 TRPSRLREFGQWITTHDWS 291


>SB_46063| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00015)
          Length = 798

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 312 TRPYTFLEFSDWIEMHRWS 368
           TRP    EF  WI  H WS
Sbjct: 378 TRPSRLREFGQWITTHDWS 396


>SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)
          Length = 2527

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 318 PYTFLEFSDWIEMHRWSAVVLKRRPVRLWTICDMY 422
           P   L F+ WI + R+S V     PVRL T+   +
Sbjct: 870 PQAGLTFATWICIDRYSRVTDDPHPVRLLTVARQF 904


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,407,881
Number of Sequences: 59808
Number of extensions: 318666
Number of successful extensions: 917
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)