Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1163
         (299 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)         117   2e-27
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si...   110   2e-25
At4g28730.1 68417.m04109 glutaredoxin family protein contains gl...    27   1.8  
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui...    27   3.1  
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui...    27   3.1  
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin...    27   3.1  
At1g23740.1 68414.m02996 oxidoreductase, zinc-binding dehydrogen...    27   3.1  
At3g18290.1 68416.m02326 zinc finger protein-related weak alignm...    25   7.1  
At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340...    25   9.4  
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea...    25   9.4  
At2g28650.1 68415.m03483 exocyst subunit EXO70 family protein co...    25   9.4  

>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
          Length = 92

 Score =  117 bits (281), Expect = 2e-27
 Identities = 50/76 (65%), Positives = 59/76 (77%)
 Frame = +2

Query: 26  MAXRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 205
           MA RTKKVGI GKYGTRYGAS+RK +KKMEV+QH+KY C FCGK  +KR  VGIW CK C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 206 KRTVAGGAWVFSTTAA 253
            +  AGGA+  +T +A
Sbjct: 61  GKVKAGGAYTMNTASA 76


>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
           similar to putative 60S ribosomal protein L37a
           GB:AAD28753 [Gossypium hirsutum]
          Length = 92

 Score =  110 bits (264), Expect = 2e-25
 Identities = 48/76 (63%), Positives = 56/76 (73%)
 Frame = +2

Query: 26  MAXRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 205
           M  RTKK  I GKYGTRYGASLRK +KKMEV+QH KY C FCGK ++KR  VGIW CK C
Sbjct: 1   MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 206 KRTVAGGAWVFSTTAA 253
            +  AGGA+  +T +A
Sbjct: 61  GKVKAGGAYTMNTASA 76


>At4g28730.1 68417.m04109 glutaredoxin family protein contains
           glutaredoxin domain, Pfam:PF00462
          Length = 174

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 56  TGKYGTRYGASLRKMVKKMEVTQHAKYTCSFC 151
           +  +G+R   S+RK V +  V  ++K  CS+C
Sbjct: 62  SSSFGSRMEESIRKTVTENTVVIYSKTWCSYC 93


>At4g38600.2 68417.m05463 HECT-domain-containing protein /
           ubiquitin-transferase family protein similar to
           SP|Q14669Thyroid receptor interacting protein 12
           (TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
           HECT-domain (ubiquitin-transferase)
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 231 QAPPATVLLHRLQDQMPTQERF 166
           + PP TVL+ +LQ+ + + ERF
Sbjct: 802 KVPPMTVLIQKLQNALSSLERF 823


>At4g38600.1 68417.m05464 HECT-domain-containing protein /
           ubiquitin-transferase family protein similar to
           SP|Q14669Thyroid receptor interacting protein 12
           (TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
           HECT-domain (ubiquitin-transferase)
          Length = 1888

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 231 QAPPATVLLHRLQDQMPTQERF 166
           + PP TVL+ +LQ+ + + ERF
Sbjct: 875 KVPPMTVLIQKLQNALSSLERF 896


>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
           protein-related contains Pfam profiles PF03107: DC1
           domain, weak hit to PF00628: PHD-finger
          Length = 513

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +2

Query: 179 VGIWSCKRCKRTVAG--GAWVFSTTAAY 256
           +GIWSC  C++ + G  GA++ +  + Y
Sbjct: 163 LGIWSCGVCRKEIDGDYGAYICNICSGY 190


>At1g23740.1 68414.m02996 oxidoreductase, zinc-binding dehydrogenase
           family protein contains Pfam profile PF00107:
           oxidoreductase, zinc-binding dehydrogenase family
          Length = 386

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 220 RRSLGILHYCCLSCRSAVRRLREVK 294
           RR   +LHYC L+ +S V ++  V+
Sbjct: 16  RRETPLLHYCSLTTKSPVYQINRVR 40


>At3g18290.1 68416.m02326 zinc finger protein-related weak alignment
           to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING
           finger) (2 copies)
          Length = 1254

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 240 ENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTS 112
           E  Q  P  +   + ++Q     RF+ S+P N    F  W++S
Sbjct: 177 EQKQVFPLLIEKFKYEEQAYIVWRFLCSIPVNMLAVFLPWISS 219


>At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340:
           Protein of unknown function (DUF740)
          Length = 521

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 22  QNGQXYQKGWNYW 60
           ++G+ + KGWN+W
Sbjct: 347 KSGKNWSKGWNFW 359


>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
           sapiens]
          Length = 726

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 65  YGTRYGASLRKMVKKMEVTQH 127
           YG R+G+ LR +V   E T H
Sbjct: 640 YGRRHGSLLRSIVSDGETTSH 660


>At2g28650.1 68415.m03483 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit
          Length = 573

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 18/72 (25%), Positives = 38/72 (52%)
 Frame = -3

Query: 216 TVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLTILRREAP*RVPYLPVIPTFLV 37
           +++ H ++D      R+I+  P++      C+++S+F T  R EA   +  +  + + ++
Sbjct: 27  SLMEHTIEDAESIIHRWIS--PEHVHSSSFCFISSLFSTENREEAKRFIDAVTTLHSGMI 84

Query: 36  RLAILVNLSDTK 1
           RL I VN +  K
Sbjct: 85  RL-ISVNPTSMK 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,845,268
Number of Sequences: 28952
Number of extensions: 134539
Number of successful extensions: 378
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)